Index

A

accession (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.Assembly attribute), [1] (mgnipy.emgapi_v2_client.models.assembly.Assembly attribute), [1] (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.genome_schema.GenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.genome_with_annotations.GenomeWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeWithAnnotations attribute), [1] ACCESSION (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 attribute) accession (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample.MGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail attribute), [1] ACCESSION (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 attribute) accession (mgnipy.V2.datasets.MGazine attribute) acollect_details() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.Genomes method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) add_note() (mgnipy.emgapi_v2_client.errors.UnexpectedStatus method) additional_keys (mgnipy.emgapi_v2_client.models.additional_contained_genome_schema.AdditionalContainedGenomeSchema property) (mgnipy.emgapi_v2_client.models.AdditionalContainedGenomeSchema property) (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun property) (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail property) (mgnipy.emgapi_v2_client.models.AnalysedRun property) (mgnipy.emgapi_v2_client.models.AnalysedRunDetail property) (mgnipy.emgapi_v2_client.models.Assembly property) (mgnipy.emgapi_v2_client.models.assembly.Assembly property) (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail property) (mgnipy.emgapi_v2_client.models.assembly_detail_metadata_type_0.AssemblyDetailMetadataType0 property) (mgnipy.emgapi_v2_client.models.assembly_detail_status_type_0.AssemblyDetailStatusType0 property) (mgnipy.emgapi_v2_client.models.AssemblyDetail property) (mgnipy.emgapi_v2_client.models.AssemblyDetailMetadataType0 property) (mgnipy.emgapi_v2_client.models.AssemblyDetailStatusType0 property) (mgnipy.emgapi_v2_client.models.Biome property) (mgnipy.emgapi_v2_client.models.biome.Biome property) (mgnipy.emgapi_v2_client.models.biome_list_filters.BiomeListFilters property) (mgnipy.emgapi_v2_client.models.BiomeListFilters property) (mgnipy.emgapi_v2_client.models.download_file_index_file.DownloadFileIndexFile property) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFile property) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation.EuropePmcAnnotation property) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group.EuropePmcAnnotationGroup property) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention property) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_tag.EuropePmcAnnotationTag property) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotation property) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationGroup property) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention property) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationTag property) (mgnipy.emgapi_v2_client.models.genome_assembly_link_schema.GenomeAssemblyLinkSchema property) (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase property) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_other_stats_type_0.GenomeCatalogueBaseOtherStatsType0 property) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail property) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_other_stats_type_0.GenomeCatalogueDetailOtherStatsType0 property) (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList property) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_other_stats_type_0.GenomeCatalogueListOtherStatsType0 property) (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail property) (mgnipy.emgapi_v2_client.models.genome_list.GenomeList property) (mgnipy.emgapi_v2_client.models.genome_schema.GenomeSchema property) (mgnipy.emgapi_v2_client.models.genome_with_annotations.GenomeWithAnnotations property) (mgnipy.emgapi_v2_client.models.genome_with_annotations_annotations.GenomeWithAnnotationsAnnotations property) (mgnipy.emgapi_v2_client.models.GenomeAssemblyLinkSchema property) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase property) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseOtherStatsType0 property) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail property) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailOtherStatsType0 property) (mgnipy.emgapi_v2_client.models.GenomeCatalogueList property) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListOtherStatsType0 property) (mgnipy.emgapi_v2_client.models.GenomeDetail property) (mgnipy.emgapi_v2_client.models.GenomeList property) (mgnipy.emgapi_v2_client.models.GenomeSchema property) (mgnipy.emgapi_v2_client.models.GenomeWithAnnotations property) (mgnipy.emgapi_v2_client.models.GenomeWithAnnotationsAnnotations property) (mgnipy.emgapi_v2_client.models.Input property) (mgnipy.emgapi_v2_client.models.input_.Input property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_metadata_type_0.MGnifyAnalysisDetailMetadataType0 property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_quality_control_summary_type_0.MGnifyAnalysisDetailQualityControlSummaryType0 property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation.MGnifyAnalysisTypedAnnotation property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations.MGnifyAnalysisWithAnnotationsAnnotations property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations_additional_property_type_1.MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_metadata_type_0.MGnifyAnalysisWithAnnotationsMetadataType0 property) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_quality_control_summary_type_0.MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 property) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file.MGnifyDownloadFileIndexFile property) (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile property) (mgnipy.emgapi_v2_client.models.m_gnify_publication.MGnifyPublication property) (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail property) (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail_metadata.MGnifyPublicationDetailMetadata property) (mgnipy.emgapi_v2_client.models.m_gnify_publication_metadata.MGnifyPublicationMetadata property) (mgnipy.emgapi_v2_client.models.m_gnify_sample.MGnifySample property) (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail property) (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail_metadata.MGnifySampleDetailMetadata property) (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata property) (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata_metadata.MGnifySampleWithMetadataMetadata property) (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy property) (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail property) (mgnipy.emgapi_v2_client.models.m_gnify_study_detail_metadata.MGnifyStudyDetailMetadata property) (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysis property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetailMetadataType0 property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetailQualityControlSummaryType0 property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisTypedAnnotation property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsAnnotations property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsMetadataType0 property) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 property) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFile property) (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile property) (mgnipy.emgapi_v2_client.models.MGnifyPublication property) (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail property) (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetailMetadata property) (mgnipy.emgapi_v2_client.models.MGnifyPublicationMetadata property) (mgnipy.emgapi_v2_client.models.MGnifySample property) (mgnipy.emgapi_v2_client.models.MGnifySampleDetail property) (mgnipy.emgapi_v2_client.models.MGnifySampleDetailMetadata property) (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata property) (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadataMetadata property) (mgnipy.emgapi_v2_client.models.MGnifyStudy property) (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail property) (mgnipy.emgapi_v2_client.models.MGnifyStudyDetailMetadata property) (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run.NinjaPaginationResponseSchemaAnalysedRun property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly.NinjaPaginationResponseSchemaAssembly property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail.NinjaPaginationResponseSchemaAssemblyDetail property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome.NinjaPaginationResponseSchemaBiome property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list.NinjaPaginationResponseSchemaGenomeCatalogueList property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list.NinjaPaginationResponseSchemaGenomeList property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis.NinjaPaginationResponseSchemaMGnifyAnalysis property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail.NinjaPaginationResponseSchemaMGnifyAnalysisDetail property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication.NinjaPaginationResponseSchemaMGnifyPublication property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample.NinjaPaginationResponseSchemaMGnifySample property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata.NinjaPaginationResponseSchemaMGnifySampleWithMetadata property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study.NinjaPaginationResponseSchemaMGnifyStudy property) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study.NinjaPaginationResponseSchemaSuperStudy property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAnalysedRun property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssembly property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssemblyDetail property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaBiome property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeCatalogueList property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeList property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysis property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisDetail property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyPublication property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySample property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySampleWithMetadata property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyStudy property) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaSuperStudy property) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt property) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year.OrderByFilterLiteralpublishedYearPublishedYear property) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt property) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt property) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYear property) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt property) (mgnipy.emgapi_v2_client.models.publication_annotations.PublicationAnnotations property) (mgnipy.emgapi_v2_client.models.publication_list_filters.PublicationListFilters property) (mgnipy.emgapi_v2_client.models.PublicationAnnotations property) (mgnipy.emgapi_v2_client.models.PublicationListFilters property) (mgnipy.emgapi_v2_client.models.run_list_filters.RunListFilters property) (mgnipy.emgapi_v2_client.models.RunListFilters property) (mgnipy.emgapi_v2_client.models.sample_list_filters.SampleListFilters property) (mgnipy.emgapi_v2_client.models.SampleListFilters property) (mgnipy.emgapi_v2_client.models.Schema property) (mgnipy.emgapi_v2_client.models.schema.Schema property) (mgnipy.emgapi_v2_client.models.study_list_filters.StudyListFilters property) (mgnipy.emgapi_v2_client.models.StudyListFilters property) (mgnipy.emgapi_v2_client.models.super_study.SuperStudy property) (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail property) (mgnipy.emgapi_v2_client.models.SuperStudy property) (mgnipy.emgapi_v2_client.models.SuperStudyDetail property) (mgnipy.emgapi_v2_client.models.token_verify_input_schema.TokenVerifyInputSchema property) (mgnipy.emgapi_v2_client.models.TokenVerifyInputSchema property) (mgnipy.emgapi_v2_client.models.webin_token_refresh_request.WebinTokenRefreshRequest property) (mgnipy.emgapi_v2_client.models.webin_token_request.WebinTokenRequest property) (mgnipy.emgapi_v2_client.models.webin_token_response.WebinTokenResponse property) (mgnipy.emgapi_v2_client.models.WebinTokenRefreshRequest property) (mgnipy.emgapi_v2_client.models.WebinTokenRequest property) (mgnipy.emgapi_v2_client.models.WebinTokenResponse property) (mgnipy.V2.datasets.MGazine property) additional_properties (mgnipy.emgapi_v2_client.models.additional_contained_genome_schema.AdditionalContainedGenomeSchema attribute) (mgnipy.emgapi_v2_client.models.AdditionalContainedGenomeSchema attribute) (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun attribute) (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail attribute) (mgnipy.emgapi_v2_client.models.AnalysedRun attribute) (mgnipy.emgapi_v2_client.models.AnalysedRunDetail attribute) (mgnipy.emgapi_v2_client.models.Assembly attribute) (mgnipy.emgapi_v2_client.models.assembly.Assembly attribute) (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute) (mgnipy.emgapi_v2_client.models.assembly_detail_metadata_type_0.AssemblyDetailMetadataType0 attribute) (mgnipy.emgapi_v2_client.models.assembly_detail_status_type_0.AssemblyDetailStatusType0 attribute) (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute) (mgnipy.emgapi_v2_client.models.AssemblyDetailMetadataType0 attribute) (mgnipy.emgapi_v2_client.models.AssemblyDetailStatusType0 attribute) (mgnipy.emgapi_v2_client.models.Biome attribute) (mgnipy.emgapi_v2_client.models.biome.Biome attribute) (mgnipy.emgapi_v2_client.models.biome_list_filters.BiomeListFilters attribute) (mgnipy.emgapi_v2_client.models.BiomeListFilters attribute) (mgnipy.emgapi_v2_client.models.download_file_index_file.DownloadFileIndexFile attribute) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFile attribute) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation.EuropePmcAnnotation attribute) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group.EuropePmcAnnotationGroup attribute) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention attribute) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_tag.EuropePmcAnnotationTag attribute) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotation attribute) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationGroup attribute) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention attribute) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationTag attribute) (mgnipy.emgapi_v2_client.models.genome_assembly_link_schema.GenomeAssemblyLinkSchema attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_other_stats_type_0.GenomeCatalogueBaseOtherStatsType0 attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_other_stats_type_0.GenomeCatalogueDetailOtherStatsType0 attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_other_stats_type_0.GenomeCatalogueListOtherStatsType0 attribute) (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute) (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute) (mgnipy.emgapi_v2_client.models.genome_schema.GenomeSchema attribute) (mgnipy.emgapi_v2_client.models.genome_with_annotations.GenomeWithAnnotations attribute) (mgnipy.emgapi_v2_client.models.genome_with_annotations_annotations.GenomeWithAnnotationsAnnotations attribute) (mgnipy.emgapi_v2_client.models.GenomeAssemblyLinkSchema attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseOtherStatsType0 attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailOtherStatsType0 attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListOtherStatsType0 attribute) (mgnipy.emgapi_v2_client.models.GenomeDetail attribute) (mgnipy.emgapi_v2_client.models.GenomeList attribute) (mgnipy.emgapi_v2_client.models.GenomeSchema attribute) (mgnipy.emgapi_v2_client.models.GenomeWithAnnotations attribute) (mgnipy.emgapi_v2_client.models.GenomeWithAnnotationsAnnotations attribute) (mgnipy.emgapi_v2_client.models.Input attribute) (mgnipy.emgapi_v2_client.models.input_.Input attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_metadata_type_0.MGnifyAnalysisDetailMetadataType0 attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_quality_control_summary_type_0.MGnifyAnalysisDetailQualityControlSummaryType0 attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation.MGnifyAnalysisTypedAnnotation attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations.MGnifyAnalysisWithAnnotationsAnnotations attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations_additional_property_type_1.MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_metadata_type_0.MGnifyAnalysisWithAnnotationsMetadataType0 attribute) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_quality_control_summary_type_0.MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 attribute) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file.MGnifyDownloadFileIndexFile attribute) (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute) (mgnipy.emgapi_v2_client.models.m_gnify_publication.MGnifyPublication attribute) (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail attribute) (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail_metadata.MGnifyPublicationDetailMetadata attribute) (mgnipy.emgapi_v2_client.models.m_gnify_publication_metadata.MGnifyPublicationMetadata attribute) (mgnipy.emgapi_v2_client.models.m_gnify_sample.MGnifySample attribute) (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail attribute) (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail_metadata.MGnifySampleDetailMetadata attribute) (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata attribute) (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata_metadata.MGnifySampleWithMetadataMetadata attribute) (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy attribute) (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail attribute) (mgnipy.emgapi_v2_client.models.m_gnify_study_detail_metadata.MGnifyStudyDetailMetadata attribute) (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysis attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetailMetadataType0 attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetailQualityControlSummaryType0 attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisTypedAnnotation attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsAnnotations attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsMetadataType0 attribute) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 attribute) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFile attribute) (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute) (mgnipy.emgapi_v2_client.models.MGnifyPublication attribute) (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail attribute) (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetailMetadata attribute) (mgnipy.emgapi_v2_client.models.MGnifyPublicationMetadata attribute) (mgnipy.emgapi_v2_client.models.MGnifySample attribute) (mgnipy.emgapi_v2_client.models.MGnifySampleDetail attribute) (mgnipy.emgapi_v2_client.models.MGnifySampleDetailMetadata attribute) (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata attribute) (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadataMetadata attribute) (mgnipy.emgapi_v2_client.models.MGnifyStudy attribute) (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail attribute) (mgnipy.emgapi_v2_client.models.MGnifyStudyDetailMetadata attribute) (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run.NinjaPaginationResponseSchemaAnalysedRun attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly.NinjaPaginationResponseSchemaAssembly attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail.NinjaPaginationResponseSchemaAssemblyDetail attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome.NinjaPaginationResponseSchemaBiome attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list.NinjaPaginationResponseSchemaGenomeCatalogueList attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list.NinjaPaginationResponseSchemaGenomeList attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis.NinjaPaginationResponseSchemaMGnifyAnalysis attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail.NinjaPaginationResponseSchemaMGnifyAnalysisDetail attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication.NinjaPaginationResponseSchemaMGnifyPublication attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample.NinjaPaginationResponseSchemaMGnifySample attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata.NinjaPaginationResponseSchemaMGnifySampleWithMetadata attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study.NinjaPaginationResponseSchemaMGnifyStudy attribute) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study.NinjaPaginationResponseSchemaSuperStudy attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAnalysedRun attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssembly attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssemblyDetail attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaBiome attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeCatalogueList attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeList attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysis attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisDetail attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyPublication attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySample attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySampleWithMetadata attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyStudy attribute) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaSuperStudy attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year.OrderByFilterLiteralpublishedYearPublishedYear attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYear attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt attribute) (mgnipy.emgapi_v2_client.models.publication_annotations.PublicationAnnotations attribute) (mgnipy.emgapi_v2_client.models.publication_list_filters.PublicationListFilters attribute) (mgnipy.emgapi_v2_client.models.PublicationAnnotations attribute) (mgnipy.emgapi_v2_client.models.PublicationListFilters attribute) (mgnipy.emgapi_v2_client.models.run_list_filters.RunListFilters attribute) (mgnipy.emgapi_v2_client.models.RunListFilters attribute) (mgnipy.emgapi_v2_client.models.sample_list_filters.SampleListFilters attribute) (mgnipy.emgapi_v2_client.models.SampleListFilters attribute) (mgnipy.emgapi_v2_client.models.Schema attribute) (mgnipy.emgapi_v2_client.models.schema.Schema attribute) (mgnipy.emgapi_v2_client.models.study_list_filters.StudyListFilters attribute) (mgnipy.emgapi_v2_client.models.StudyListFilters attribute) (mgnipy.emgapi_v2_client.models.super_study.SuperStudy attribute) (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail attribute) (mgnipy.emgapi_v2_client.models.SuperStudy attribute) (mgnipy.emgapi_v2_client.models.SuperStudyDetail attribute) (mgnipy.emgapi_v2_client.models.token_verify_input_schema.TokenVerifyInputSchema attribute) (mgnipy.emgapi_v2_client.models.TokenVerifyInputSchema attribute) (mgnipy.emgapi_v2_client.models.webin_token_refresh_request.WebinTokenRefreshRequest attribute) (mgnipy.emgapi_v2_client.models.webin_token_request.WebinTokenRequest attribute) (mgnipy.emgapi_v2_client.models.webin_token_response.WebinTokenResponse attribute) (mgnipy.emgapi_v2_client.models.WebinTokenRefreshRequest attribute) (mgnipy.emgapi_v2_client.models.WebinTokenRequest attribute) (mgnipy.emgapi_v2_client.models.WebinTokenResponse attribute) (mgnipy.V2.datasets.MGazine attribute)

AdditionalContainedGenomeSchema (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.additional_contained_genome_schema) adownload() (mgnipy.V2.datasets.MGazine method) adownload_all() (mgnipy.V2.datasets.MGazine method) afirst() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) AGE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) aget() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_executor.QueryExecutor method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) aget_any_first() (mgnipy.V2.query_executor.QueryExecutor method) aget_detail() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.Genomes method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) aget_list() (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.StudyDetail method) aiter_details() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.Genomes method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) alias (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] ALTITUDE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) AMPLI (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes attribute) (mgnipy.emgapi_v2_client.models.ExperimentTypes attribute) AnalysedRun (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.analysed_run) AnalysedRunDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.analysed_run_detail) Analyses (class in mgnipy.V2) (class in mgnipy.V2.proxies) ANALYSIS_RO_CRATE (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute) AnalysisDetail (class in mgnipy.V2.proxies) AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type) annotation_text (mgnipy.emgapi_v2_client.models.europe_pmc_annotation.EuropePmcAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotation attribute), [1] annotation_type (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group.EuropePmcAnnotationGroup attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationGroup attribute), [1] annotations (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group.EuropePmcAnnotationGroup attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationGroup attribute), [1] (mgnipy.emgapi_v2_client.models.genome_with_annotations.GenomeWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute) apage() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_executor.QueryExecutor method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) args (mgnipy.emgapi_v2_client.errors.UnexpectedStatus attribute) ASSEM (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes attribute) (mgnipy.emgapi_v2_client.models.ExperimentTypes attribute) assembler_name (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute), [1] assembler_version (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute), [1] Assemblies (class in mgnipy.V2.proxies) Assembly (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.assembly) assembly (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute) ASSEMBLY_QUALITY (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) ASSEMBLY_SOFTWARE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) assembly_study_accession (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute), [1] AssemblyDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.assembly_detail) (class in mgnipy.V2.proxies) AssemblyDetailMetadataType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.assembly_detail_metadata_type_0) AssemblyDetailStatusType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.assembly_detail_status_type_0) asyncio() (in module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations) (in module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations_of_type) (in module mgnipy.emgapi_v2_client.api.analyses.get_mgnify_analysis) (in module mgnipy.emgapi_v2_client.api.analyses.list_mgnify_analyses) (in module mgnipy.emgapi_v2_client.api.assemblies.get_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_additional_contained_genomes_for_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_analyses_for_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_assemblies) (in module mgnipy.emgapi_v2_client.api.assemblies.list_genome_links_for_assembly) (in module mgnipy.emgapi_v2_client.api.authentication.token_obtain_sliding) (in module mgnipy.emgapi_v2_client.api.authentication.token_refresh_sliding) (in module mgnipy.emgapi_v2_client.api.authentication.token_verify) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_annotations) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue_genomes) (in module mgnipy.emgapi_v2_client.api.genomes.get_mgnify_genome) (in module mgnipy.emgapi_v2_client.api.genomes.list_genome_catalogues) (in module mgnipy.emgapi_v2_client.api.genomes.list_mgnify_genomes) (in module mgnipy.emgapi_v2_client.api.miscellaneous.list_mgnify_biomes) (in module mgnipy.emgapi_v2_client.api.private_data.list_private_mgnify_studies) (in module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication) (in module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication_annotations) (in module mgnipy.emgapi_v2_client.api.publications.list_mgnify_publications) (in module mgnipy.emgapi_v2_client.api.runs.get_analysed_run) (in module mgnipy.emgapi_v2_client.api.runs.list_analysed_runs) (in module mgnipy.emgapi_v2_client.api.runs.list_runs_analyses) (in module mgnipy.emgapi_v2_client.api.runs.list_runs_assemblies) (in module mgnipy.emgapi_v2_client.api.samples.get_mgnify_sample) (in module mgnipy.emgapi_v2_client.api.samples.list_mgnify_samples) (in module mgnipy.emgapi_v2_client.api.samples.list_sample_runs) (in module mgnipy.emgapi_v2_client.api.studies.get_mgnify_study) (in module mgnipy.emgapi_v2_client.api.studies.get_super_study) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_studies) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_analyses) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_publications) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_samples) (in module mgnipy.emgapi_v2_client.api.studies.list_super_studies) asyncio_detailed() (in module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations) (in module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations_of_type) (in module mgnipy.emgapi_v2_client.api.analyses.get_mgnify_analysis) (in module mgnipy.emgapi_v2_client.api.analyses.list_mgnify_analyses) (in module mgnipy.emgapi_v2_client.api.assemblies.get_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_additional_contained_genomes_for_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_analyses_for_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_assemblies) (in module mgnipy.emgapi_v2_client.api.assemblies.list_genome_links_for_assembly) (in module mgnipy.emgapi_v2_client.api.authentication.token_obtain_sliding) (in module mgnipy.emgapi_v2_client.api.authentication.token_refresh_sliding) (in module mgnipy.emgapi_v2_client.api.authentication.token_verify) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_annotations) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue_genomes) (in module mgnipy.emgapi_v2_client.api.genomes.get_mgnify_genome) (in module mgnipy.emgapi_v2_client.api.genomes.list_genome_catalogues) (in module mgnipy.emgapi_v2_client.api.genomes.list_mgnify_genomes) (in module mgnipy.emgapi_v2_client.api.miscellaneous.list_mgnify_biomes) (in module mgnipy.emgapi_v2_client.api.private_data.list_private_mgnify_studies) (in module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication) (in module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication_annotations) (in module mgnipy.emgapi_v2_client.api.publications.list_mgnify_publications) (in module mgnipy.emgapi_v2_client.api.runs.get_analysed_run) (in module mgnipy.emgapi_v2_client.api.runs.list_analysed_runs) (in module mgnipy.emgapi_v2_client.api.runs.list_runs_analyses) (in module mgnipy.emgapi_v2_client.api.runs.list_runs_assemblies) (in module mgnipy.emgapi_v2_client.api.samples.get_mgnify_sample) (in module mgnipy.emgapi_v2_client.api.samples.list_mgnify_samples) (in module mgnipy.emgapi_v2_client.api.samples.list_sample_runs) (in module mgnipy.emgapi_v2_client.api.studies.get_mgnify_study) (in module mgnipy.emgapi_v2_client.api.studies.get_super_study) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_studies) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_analyses) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_publications) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_samples) (in module mgnipy.emgapi_v2_client.api.studies.list_super_studies) auth_header_name (mgnipy.emgapi_v2_client.AuthenticatedClient attribute), [1] (mgnipy.emgapi_v2_client.client.AuthenticatedClient attribute), [1] (mgnipy.V2.AuthenticatedClient attribute), [1] AuthenticatedClient (class in mgnipy.emgapi_v2_client) (class in mgnipy.emgapi_v2_client.client) (class in mgnipy.V2)

B

base_url (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) BINNING_SOFTWARE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) BIO_MATERIAL (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) BIOM (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) Biome (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.biome) biome (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample.MGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail attribute), [1]

biome_lineage (mgnipy.emgapi_v2_client.models.biome_list_filters.BiomeListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.BiomeListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.sample_list_filters.SampleListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.SampleListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.study_list_filters.StudyListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.StudyListFilters attribute), [1] biome_name (mgnipy.emgapi_v2_client.models.Biome attribute), [1] (mgnipy.emgapi_v2_client.models.biome.Biome attribute), [1] BiomeDetail (class in mgnipy.V2.proxies) BiomeListFilters (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.biome_list_filters) Biomes (class in mgnipy.V2) (class in mgnipy.V2.proxies) BiomesTreeMixin (class in mgnipy.V2.mixins) BREED (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) BROAD_SCALE_ENVIRONMENTAL_CONTEXT (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) BROKER_NAME (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute)

C

cani (mgnipy.emgapi_v2_client.models.additional_contained_genome_schema.AdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.AdditionalContainedGenomeSchema attribute), [1] capitalize() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) casefold() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) catalogue (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] catalogue_biome_label (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] catalogue_id (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.genome_schema.GenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeSchema attribute), [1] catalogue_type (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] catalogue_version (mgnipy.emgapi_v2_client.models.genome_schema.GenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeSchema attribute), [1] CatalogueDetail (class in mgnipy.V2.proxies) Catalogues (class in mgnipy.V2.proxies) CELL_LINE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) CELL_TYPE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) center() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) CENTER_NAME (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) CHECKLIST (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) child_resource (mgnipy.V2.Analyses attribute) (mgnipy.V2.Genomes attribute) (mgnipy.V2.proxies.Analyses attribute) (mgnipy.V2.proxies.Assemblies attribute) (mgnipy.V2.proxies.Biomes attribute) (mgnipy.V2.proxies.Catalogues attribute) (mgnipy.V2.proxies.Genomes attribute) (mgnipy.V2.proxies.MGnifyList attribute) (mgnipy.V2.proxies.PrivateStudies attribute) (mgnipy.V2.proxies.Publications attribute) (mgnipy.V2.proxies.Runs attribute) (mgnipy.V2.proxies.Samples attribute) (mgnipy.V2.proxies.Studies attribute) (mgnipy.V2.Samples attribute) (mgnipy.V2.Studies attribute) Client (class in mgnipy.emgapi_v2_client) (class in mgnipy.emgapi_v2_client.client) (class in mgnipy.V2) CODING_SEQUENCES (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute)

collect_details() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.Genomes method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) COLLECTED_BY (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) COLLECTION_DATE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) COLLECTION_DATE_END (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) COLLECTION_DATE_START (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) completeness (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] COMPLETENESS_SCORE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) config (mgnipy.V2.Analyses attribute) (mgnipy.V2.core.MGnifier attribute) (mgnipy.V2.Genomes attribute) (mgnipy.V2.proxies.Analyses attribute) (mgnipy.V2.proxies.AnalysisDetail attribute) (mgnipy.V2.proxies.Assemblies attribute) (mgnipy.V2.proxies.AssemblyDetail attribute) (mgnipy.V2.proxies.BiomeDetail attribute) (mgnipy.V2.proxies.Biomes attribute) (mgnipy.V2.proxies.CatalogueDetail attribute) (mgnipy.V2.proxies.Catalogues attribute) (mgnipy.V2.proxies.GenomeDetail attribute) (mgnipy.V2.proxies.Genomes attribute) (mgnipy.V2.proxies.MGnifyDetail attribute) (mgnipy.V2.proxies.MGnifyList attribute) (mgnipy.V2.proxies.PrivateStudies attribute) (mgnipy.V2.proxies.PublicationDetail attribute) (mgnipy.V2.proxies.Publications attribute) (mgnipy.V2.proxies.RunDetail attribute) (mgnipy.V2.proxies.Runs attribute) (mgnipy.V2.proxies.SampleDetail attribute) (mgnipy.V2.proxies.Samples attribute) (mgnipy.V2.proxies.Studies attribute) (mgnipy.V2.proxies.StudyDetail attribute) (mgnipy.V2.query_set.QuerySet attribute) (mgnipy.V2.Samples attribute) (mgnipy.V2.Studies attribute) containment (mgnipy.emgapi_v2_client.models.additional_contained_genome_schema.AdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.AdditionalContainedGenomeSchema attribute), [1] contamination (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] CONTAMINATION_SCORE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) content (mgnipy.emgapi_v2_client.types.Response attribute) count (mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation.MGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run.NinjaPaginationResponseSchemaAnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly.NinjaPaginationResponseSchemaAssembly attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail.NinjaPaginationResponseSchemaAssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome.NinjaPaginationResponseSchemaBiome attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list.NinjaPaginationResponseSchemaGenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list.NinjaPaginationResponseSchemaGenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis.NinjaPaginationResponseSchemaMGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail.NinjaPaginationResponseSchemaMGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication.NinjaPaginationResponseSchemaMGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample.NinjaPaginationResponseSchemaMGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata.NinjaPaginationResponseSchemaMGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study.NinjaPaginationResponseSchemaMGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study.NinjaPaginationResponseSchemaSuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssembly attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaBiome attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaSuperStudy attribute), [1] (mgnipy.V2.Analyses attribute) (mgnipy.V2.core.MGnifier attribute) (mgnipy.V2.Genomes attribute) (mgnipy.V2.proxies.Analyses attribute) (mgnipy.V2.proxies.AnalysisDetail attribute) (mgnipy.V2.proxies.Assemblies attribute) (mgnipy.V2.proxies.AssemblyDetail attribute) (mgnipy.V2.proxies.BiomeDetail attribute) (mgnipy.V2.proxies.Biomes attribute) (mgnipy.V2.proxies.CatalogueDetail attribute) (mgnipy.V2.proxies.Catalogues attribute) (mgnipy.V2.proxies.GenomeDetail attribute) (mgnipy.V2.proxies.Genomes attribute) (mgnipy.V2.proxies.MGnifyDetail attribute) (mgnipy.V2.proxies.MGnifyList attribute) (mgnipy.V2.proxies.PrivateStudies attribute) (mgnipy.V2.proxies.PublicationDetail attribute) (mgnipy.V2.proxies.Publications attribute) (mgnipy.V2.proxies.RunDetail attribute) (mgnipy.V2.proxies.Runs attribute) (mgnipy.V2.proxies.SampleDetail attribute) (mgnipy.V2.proxies.Samples attribute) (mgnipy.V2.proxies.Studies attribute) (mgnipy.V2.proxies.StudyDetail attribute) (mgnipy.V2.query_set.QuerySet attribute) (mgnipy.V2.Samples attribute) (mgnipy.V2.Studies attribute) count() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) COUNTRY (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) CSI (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType attribute) CSV (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) CULTIVAR (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) CULTURE_COLLECTION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute)

D

data (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.mixins.ResultsHandlerMixin property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) DATAHUB (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) default_page_size (mgnipy.V2.Analyses attribute) (mgnipy.V2.core.MGnifier attribute) (mgnipy.V2.Genomes attribute) (mgnipy.V2.proxies.Analyses attribute) (mgnipy.V2.proxies.AnalysisDetail attribute) (mgnipy.V2.proxies.Assemblies attribute) (mgnipy.V2.proxies.AssemblyDetail attribute) (mgnipy.V2.proxies.BiomeDetail attribute) (mgnipy.V2.proxies.Biomes attribute) (mgnipy.V2.proxies.CatalogueDetail attribute) (mgnipy.V2.proxies.Catalogues attribute) (mgnipy.V2.proxies.GenomeDetail attribute) (mgnipy.V2.proxies.Genomes attribute) (mgnipy.V2.proxies.MGnifyDetail attribute) (mgnipy.V2.proxies.MGnifyList attribute) (mgnipy.V2.proxies.PrivateStudies attribute) (mgnipy.V2.proxies.PublicationDetail attribute) (mgnipy.V2.proxies.Publications attribute) (mgnipy.V2.proxies.RunDetail attribute) (mgnipy.V2.proxies.Runs attribute) (mgnipy.V2.proxies.SampleDetail attribute) (mgnipy.V2.proxies.Samples attribute) (mgnipy.V2.proxies.Studies attribute) (mgnipy.V2.proxies.StudyDetail attribute) (mgnipy.V2.query_set.QuerySet attribute) (mgnipy.V2.Samples attribute) (mgnipy.V2.Studies attribute) DEPTH (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) describe_endpoint() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.DescribeEmgapiMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) describe_relationships() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method)

describe_resource() (mgnipy.mgnipy.MGnipy method) describe_resources() (mgnipy.mgnipy.MGnipy method) DescribeEmgapiMixin (class in mgnipy.V2.mixins) DESCRIPTION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) description (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group.EuropePmcAnnotationGroup attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationGroup attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation.MGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.super_study.SuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudyDetail attribute), [1] DEV_STAGE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) DISEASE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) download() (mgnipy.V2.datasets.MGazine method) download_all() (mgnipy.V2.datasets.MGazine method) download_group (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] download_type (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] DownloadFileIndexFile (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.download_file_index_file) DownloadFileIndexFileIndexType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.download_file_index_file_index_type) DownloadFileType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.download_file_type) downloads (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail attribute), [1] (mgnipy.V2.datasets.MGazine attribute) downloads_df (mgnipy.V2.datasets.MGazine property) DownloadType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.download_type) dry_run() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method)

E

ECOTYPE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) ELEVATION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) emgapi_docs (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.mixins.DescribeEmgapiMixin property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) emgapi_resource (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.mixins.DescribeEmgapiMixin property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) ena_accessions (mgnipy.emgapi_v2_client.models.m_gnify_sample.MGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail attribute), [1] ena_genome_accession (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.genome_schema.GenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeSchema attribute), [1] ena_sample_accession (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] ENASampleFields (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ena_sample_fields) ENAStudyFields (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ena_study_fields) encode() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) endpoint_module (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) endpoint_module() (mgnipy.V2.mixins.DescribeEmgapiMixin method) endswith() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method)

ENVIRONMENT_BIOME (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) ENVIRONMENT_FEATURE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) ENVIRONMENT_MATERIAL (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) ENVIRONMENTAL_MEDIUM (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) ENVIRONMENTAL_SAMPLE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) EUKARYOTES (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType attribute) EuropePmcAnnotation (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.europe_pmc_annotation) EuropePmcAnnotationGroup (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group) EuropePmcAnnotationMention (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention) EuropePmcAnnotationTag (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.europe_pmc_annotation_tag) exact (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention attribute), [1] exec (mgnipy.V2.Analyses attribute) (mgnipy.V2.core.MGnifier attribute) (mgnipy.V2.Genomes attribute) (mgnipy.V2.proxies.Analyses attribute) (mgnipy.V2.proxies.AnalysisDetail attribute) (mgnipy.V2.proxies.Assemblies attribute) (mgnipy.V2.proxies.AssemblyDetail attribute) (mgnipy.V2.proxies.BiomeDetail attribute) (mgnipy.V2.proxies.Biomes attribute) (mgnipy.V2.proxies.CatalogueDetail attribute) (mgnipy.V2.proxies.Catalogues attribute) (mgnipy.V2.proxies.GenomeDetail attribute) (mgnipy.V2.proxies.Genomes attribute) (mgnipy.V2.proxies.MGnifyDetail attribute) (mgnipy.V2.proxies.MGnifyList attribute) (mgnipy.V2.proxies.PrivateStudies attribute) (mgnipy.V2.proxies.PublicationDetail attribute) (mgnipy.V2.proxies.Publications attribute) (mgnipy.V2.proxies.RunDetail attribute) (mgnipy.V2.proxies.Runs attribute) (mgnipy.V2.proxies.SampleDetail attribute) (mgnipy.V2.proxies.Samples attribute) (mgnipy.V2.proxies.Studies attribute) (mgnipy.V2.proxies.StudyDetail attribute) (mgnipy.V2.query_set.QuerySet attribute) (mgnipy.V2.Samples attribute) (mgnipy.V2.Studies attribute) expandtabs() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) experiment_type (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute) EXPERIMENTAL_FACTOR (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) ExperimentTypes (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.experiment_types) explain() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method)

F

FAI (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType attribute) FASTA (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) File (class in mgnipy.emgapi_v2_client.types) file_name (mgnipy.emgapi_v2_client.types.File attribute) file_size_bytes (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] file_type (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] filter() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) 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(mgnipy.emgapi_v2_client.models.GenomeList class method) (mgnipy.emgapi_v2_client.models.GenomeSchema class method) (mgnipy.emgapi_v2_client.models.GenomeWithAnnotations class method) (mgnipy.emgapi_v2_client.models.GenomeWithAnnotationsAnnotations class method) (mgnipy.emgapi_v2_client.models.Input class method) (mgnipy.emgapi_v2_client.models.input_.Input class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_metadata_type_0.MGnifyAnalysisDetailMetadataType0 class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_quality_control_summary_type_0.MGnifyAnalysisDetailQualityControlSummaryType0 class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation.MGnifyAnalysisTypedAnnotation class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations.MGnifyAnalysisWithAnnotationsAnnotations class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations_additional_property_type_1.MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_metadata_type_0.MGnifyAnalysisWithAnnotationsMetadataType0 class method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_quality_control_summary_type_0.MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 class method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file.MGnifyDownloadFileIndexFile class method) (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile class method) (mgnipy.emgapi_v2_client.models.m_gnify_publication.MGnifyPublication class method) (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail class method) (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail_metadata.MGnifyPublicationDetailMetadata class method) (mgnipy.emgapi_v2_client.models.m_gnify_publication_metadata.MGnifyPublicationMetadata class method) (mgnipy.emgapi_v2_client.models.m_gnify_sample.MGnifySample class method) (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail class method) (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail_metadata.MGnifySampleDetailMetadata class method) (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata class method) (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata_metadata.MGnifySampleWithMetadataMetadata class method) (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy class method) (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail class method) (mgnipy.emgapi_v2_client.models.m_gnify_study_detail_metadata.MGnifyStudyDetailMetadata class method) (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysis class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetailMetadataType0 class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetailQualityControlSummaryType0 class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisTypedAnnotation class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsAnnotations class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsMetadataType0 class method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 class method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFile class method) (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile class method) (mgnipy.emgapi_v2_client.models.MGnifyPublication class method) (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail class method) (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetailMetadata class method) (mgnipy.emgapi_v2_client.models.MGnifyPublicationMetadata class method) (mgnipy.emgapi_v2_client.models.MGnifySample class method) (mgnipy.emgapi_v2_client.models.MGnifySampleDetail class method) (mgnipy.emgapi_v2_client.models.MGnifySampleDetailMetadata class method) (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata class method) (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadataMetadata class method) (mgnipy.emgapi_v2_client.models.MGnifyStudy class method) (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail class method) (mgnipy.emgapi_v2_client.models.MGnifyStudyDetailMetadata class method) (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run.NinjaPaginationResponseSchemaAnalysedRun class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly.NinjaPaginationResponseSchemaAssembly class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail.NinjaPaginationResponseSchemaAssemblyDetail class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome.NinjaPaginationResponseSchemaBiome class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list.NinjaPaginationResponseSchemaGenomeCatalogueList class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list.NinjaPaginationResponseSchemaGenomeList class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis.NinjaPaginationResponseSchemaMGnifyAnalysis class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail.NinjaPaginationResponseSchemaMGnifyAnalysisDetail class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication.NinjaPaginationResponseSchemaMGnifyPublication class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample.NinjaPaginationResponseSchemaMGnifySample class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata.NinjaPaginationResponseSchemaMGnifySampleWithMetadata class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study.NinjaPaginationResponseSchemaMGnifyStudy class method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study.NinjaPaginationResponseSchemaSuperStudy class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAnalysedRun class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssembly class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssemblyDetail class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaBiome class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeCatalogueList class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeList class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysis class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisDetail class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyPublication class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySample class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySampleWithMetadata class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyStudy class method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaSuperStudy class method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt class method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year.OrderByFilterLiteralpublishedYearPublishedYear class method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt class method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt class method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYear class method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt class method) (mgnipy.emgapi_v2_client.models.publication_annotations.PublicationAnnotations class method) (mgnipy.emgapi_v2_client.models.publication_list_filters.PublicationListFilters class method) (mgnipy.emgapi_v2_client.models.PublicationAnnotations class method) (mgnipy.emgapi_v2_client.models.PublicationListFilters class method) (mgnipy.emgapi_v2_client.models.run_list_filters.RunListFilters class method) (mgnipy.emgapi_v2_client.models.RunListFilters class method) (mgnipy.emgapi_v2_client.models.sample_list_filters.SampleListFilters class method) (mgnipy.emgapi_v2_client.models.SampleListFilters class method) (mgnipy.emgapi_v2_client.models.Schema class method) (mgnipy.emgapi_v2_client.models.schema.Schema class method) (mgnipy.emgapi_v2_client.models.study_list_filters.StudyListFilters class method) (mgnipy.emgapi_v2_client.models.StudyListFilters class method) (mgnipy.emgapi_v2_client.models.super_study.SuperStudy class method) (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail class method) (mgnipy.emgapi_v2_client.models.SuperStudy class method) (mgnipy.emgapi_v2_client.models.SuperStudyDetail class method) (mgnipy.emgapi_v2_client.models.token_verify_input_schema.TokenVerifyInputSchema class method) (mgnipy.emgapi_v2_client.models.TokenVerifyInputSchema class method) (mgnipy.emgapi_v2_client.models.webin_token_refresh_request.WebinTokenRefreshRequest class method) (mgnipy.emgapi_v2_client.models.webin_token_request.WebinTokenRequest class method) (mgnipy.emgapi_v2_client.models.webin_token_response.WebinTokenResponse class method) (mgnipy.emgapi_v2_client.models.WebinTokenRefreshRequest class method) (mgnipy.emgapi_v2_client.models.WebinTokenRequest class method) (mgnipy.emgapi_v2_client.models.WebinTokenResponse class method) (mgnipy.V2.datasets.MGazine class method) ftp_url (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] FUNCTIONAL_ANALYSIS (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute)

G

gc_content (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] genome (mgnipy.emgapi_v2_client.models.additional_contained_genome_schema.AdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.AdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.genome_assembly_link_schema.GenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeAssemblyLinkSchema attribute), [1] GENOME_ANALYSIS (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute) genome_catalogues (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudyDetail attribute), [1] genome_count (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] GenomeAssemblyLinkSchema (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_assembly_link_schema) GenomeCatalogueBase (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_base) GenomeCatalogueBaseCatalogueType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type) GenomeCatalogueBaseOtherStatsType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_base_other_stats_type_0) GenomeCatalogueDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_detail) GenomeCatalogueDetailCatalogueType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type) GenomeCatalogueDetailOtherStatsType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_detail_other_stats_type_0) GenomeCatalogueList (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_list) GenomeCatalogueListCatalogueType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type) GenomeCatalogueListOtherStatsType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_catalogue_list_other_stats_type_0) GenomeDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_detail) (class in mgnipy.V2.proxies) GenomeList (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_list) Genomes (class in mgnipy.V2) (class in mgnipy.V2.proxies) GenomeSchema (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_schema) GenomeType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_type) GenomeWithAnnotations (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_with_annotations) GenomeWithAnnotationsAnnotations (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.genome_with_annotations_annotations) GEO_ACCESSION (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) geographic_origin (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] geographic_range (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] GERMLINE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) get() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_executor.QueryExecutor method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method)

get_any_first() (mgnipy.V2.query_executor.QueryExecutor method) get_async_httpx_client() (mgnipy.emgapi_v2_client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.Client method) (mgnipy.emgapi_v2_client.client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.client.Client method) (mgnipy.V2.AuthenticatedClient method) (mgnipy.V2.Client method) get_detail() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.Genomes method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) get_httpx_client() (mgnipy.emgapi_v2_client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.Client method) (mgnipy.emgapi_v2_client.client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.client.Client method) (mgnipy.V2.AuthenticatedClient method) (mgnipy.V2.Client method) get_list() (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.StudyDetail method) get_pageinated_counts() (mgnipy.V2.query_executor.QueryExecutor method) GFF (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) go_terms() (mgnipy.V2.datasets.MGazineCurator method) GZI (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType attribute) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType attribute)

H

has_analyses_from_pipeline (mgnipy.emgapi_v2_client.models.study_list_filters.StudyListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.StudyListFilters attribute), [1] has_experiment_type (mgnipy.emgapi_v2_client.models.run_list_filters.RunListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.RunListFilters attribute), [1] headers (mgnipy.emgapi_v2_client.types.Response attribute) HOST (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HOST_BODY_SITE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HOST_GENOTYPE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HOST_GRAVIDITY (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HOST_GROWTH_CONDITIONS (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute)

HOST_PHENOTYPE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HOST_SCIENTIFIC_NAME (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HOST_SEX (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HOST_STATUS (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HOST_TAX_ID (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) HTML (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) HYASS (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes attribute) (mgnipy.emgapi_v2_client.models.ExperimentTypes attribute)

I

id (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention attribute), [1] id_param_key (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) IDENTIFIED_BY (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) identifier (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) img_genome_accession (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] index() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) index_file (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] index_files (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] index_type (mgnipy.emgapi_v2_client.models.download_file_index_file.DownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.DownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file.MGnifyDownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFile attribute), [1] Input (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.input_) instrument_model (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRunDetail attribute), [1] instrument_platform (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRunDetail attribute), [1] INVESTIGATION_TYPE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) isalnum() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) isalpha() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) isascii() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) 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method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) isspace() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) istitle() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) isupper() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) items (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run.NinjaPaginationResponseSchemaAnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly.NinjaPaginationResponseSchemaAssembly attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail.NinjaPaginationResponseSchemaAssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome.NinjaPaginationResponseSchemaBiome attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list.NinjaPaginationResponseSchemaGenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list.NinjaPaginationResponseSchemaGenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis.NinjaPaginationResponseSchemaMGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail.NinjaPaginationResponseSchemaMGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication.NinjaPaginationResponseSchemaMGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample.NinjaPaginationResponseSchemaMGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata.NinjaPaginationResponseSchemaMGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study.NinjaPaginationResponseSchemaMGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study.NinjaPaginationResponseSchemaSuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssembly attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaBiome attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaMGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaSuperStudy attribute), [1] iter_details() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.Genomes method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method)

J

join() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method)

JSON (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute)

K

KEYWORDS (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute)

L

LAST_UPDATED (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) LAT (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) length (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] lineage (mgnipy.emgapi_v2_client.models.Biome attribute), [1] (mgnipy.emgapi_v2_client.models.biome.Biome attribute), [1] lineages (mgnipy.V2.Biomes property) (mgnipy.V2.mixins.BiomesTreeMixin property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) list_relationships() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) list_resources() (mgnipy.mgnipy.MGnipy method) list_supported_params() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.DescribeEmgapiMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) list_urls() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) ListMgnifyPublicationsOrderType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0) ListMgnifySamplesOrderType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0) ListMgnifyStudiesOrderType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0) ljust() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method)

LOCAL_ENVIRONMENTAL_CONTEXT (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) LOCATION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) LOCATION_END (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) LOCATION_START (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) logo_url (mgnipy.emgapi_v2_client.models.super_study.SuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudyDetail attribute), [1] LON (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) long_description (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] lower() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) 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(mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) LRASS (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes attribute) (mgnipy.emgapi_v2_client.models.ExperimentTypes attribute) lstrip() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method)

M

MAG (mgnipy.emgapi_v2_client.models.genome_type.GenomeType attribute) (mgnipy.emgapi_v2_client.models.GenomeType attribute) mag_accession (mgnipy.emgapi_v2_client.models.genome_assembly_link_schema.GenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeAssemblyLinkSchema attribute), [1] main() (in module mgnipy.cli) maketrans() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType static method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType static method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType static method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType static method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType static method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType static method) (mgnipy.emgapi_v2_client.models.DownloadFileType static method) (mgnipy.emgapi_v2_client.models.DownloadType static method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields static method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields static method) (mgnipy.emgapi_v2_client.models.ENASampleFields static method) (mgnipy.emgapi_v2_client.models.ENAStudyFields static method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes static method) (mgnipy.emgapi_v2_client.models.ExperimentTypes static method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType static method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType static method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType static method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType static method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType static method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType static method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType static method) (mgnipy.emgapi_v2_client.models.GenomeType static method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 static method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 static method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 static method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 static method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 static method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 static method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType static method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType static method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType static method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType static method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 static method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 static method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 static method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 static method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 static method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 static method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions static method) (mgnipy.emgapi_v2_client.models.PipelineVersions static method) map_with_concurrency() (mgnipy.V2.query_executor.QueryExecutor method) MARINE_REGION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) MATING_TYPE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) max_depth (mgnipy.emgapi_v2_client.models.biome_list_filters.BiomeListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.BiomeListFilters attribute), [1] mentions (mgnipy.emgapi_v2_client.models.europe_pmc_annotation.EuropePmcAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotation attribute), [1] METAB (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes attribute) (mgnipy.emgapi_v2_client.models.ExperimentTypes attribute) metadata (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_publication.MGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail attribute), [1] (mgnipy.V2.datasets.MGazine attribute) METAG (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes attribute) (mgnipy.emgapi_v2_client.models.ExperimentTypes attribute) METAT (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes attribute) (mgnipy.emgapi_v2_client.models.ExperimentTypes attribute) MGazine (class in mgnipy.V2.datasets) MGazineCurator (class in mgnipy.V2.datasets) MGnifier (class in mgnipy.V2) (class in mgnipy.V2.core) MGnifyAnalysis (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis) MGnifyAnalysisDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail) MGnifyAnalysisDetailMetadataType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_metadata_type_0) MGnifyAnalysisDetailQualityControlSummaryType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_quality_control_summary_type_0) MGnifyAnalysisDownloadFile (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file) MGnifyAnalysisTypedAnnotation (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation) MGnifyAnalysisWithAnnotations (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations) MGnifyAnalysisWithAnnotationsAnnotations (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations) MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations_additional_property_type_1) MGnifyAnalysisWithAnnotationsMetadataType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_metadata_type_0) MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_quality_control_summary_type_0) MGnifyDetail (class in mgnipy.V2.proxies) MGnifyDownloadFileIndexFile (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file) MGnifyDownloadFileIndexFileIndexType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type) MGnifyFunctionalAnalysisAnnotationType (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type) MGnifyGenomeDownloadFile (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file) MGnifyList (class in mgnipy.V2.proxies) MGnifyPublication (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_publication) MGnifyPublicationDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_publication_detail) MGnifyPublicationDetailMetadata (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_publication_detail_metadata) MGnifyPublicationMetadata (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_publication_metadata) MGnifySample (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_sample) MGnifySampleDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_sample_detail) MGnifySampleDetailMetadata (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_sample_detail_metadata) MGnifySampleWithMetadata (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata) MGnifySampleWithMetadataMetadata (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata_metadata) MGnifyStudy (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_study) MGnifyStudyDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_study_detail) MGnifyStudyDetailMetadata (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_study_detail_metadata) MGnifyStudyDownloadFile (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.m_gnify_study_download_file) mgnipy module MGnipy (class in mgnipy.mgnipy) mgnipy.cli module mgnipy.emgapi_v2_client module mgnipy.emgapi_v2_client.api module mgnipy.emgapi_v2_client.api.analyses module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations_of_type module mgnipy.emgapi_v2_client.api.analyses.get_mgnify_analysis module mgnipy.emgapi_v2_client.api.analyses.list_mgnify_analyses module mgnipy.emgapi_v2_client.api.assemblies module mgnipy.emgapi_v2_client.api.assemblies.get_assembly module mgnipy.emgapi_v2_client.api.assemblies.list_additional_contained_genomes_for_assembly module mgnipy.emgapi_v2_client.api.assemblies.list_analyses_for_assembly module mgnipy.emgapi_v2_client.api.assemblies.list_assemblies module mgnipy.emgapi_v2_client.api.assemblies.list_genome_links_for_assembly module mgnipy.emgapi_v2_client.api.authentication module mgnipy.emgapi_v2_client.api.authentication.token_obtain_sliding module mgnipy.emgapi_v2_client.api.authentication.token_refresh_sliding module mgnipy.emgapi_v2_client.api.authentication.token_verify module mgnipy.emgapi_v2_client.api.genomes module mgnipy.emgapi_v2_client.api.genomes.get_genome_annotations module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue_genomes module mgnipy.emgapi_v2_client.api.genomes.get_mgnify_genome module mgnipy.emgapi_v2_client.api.genomes.list_genome_catalogues module mgnipy.emgapi_v2_client.api.genomes.list_mgnify_genomes module mgnipy.emgapi_v2_client.api.miscellaneous module mgnipy.emgapi_v2_client.api.miscellaneous.list_mgnify_biomes module mgnipy.emgapi_v2_client.api.private_data module mgnipy.emgapi_v2_client.api.private_data.list_private_mgnify_studies module mgnipy.emgapi_v2_client.api.publications module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication_annotations module mgnipy.emgapi_v2_client.api.publications.list_mgnify_publications module mgnipy.emgapi_v2_client.api.runs module mgnipy.emgapi_v2_client.api.runs.get_analysed_run module mgnipy.emgapi_v2_client.api.runs.list_analysed_runs module mgnipy.emgapi_v2_client.api.runs.list_runs_analyses module mgnipy.emgapi_v2_client.api.runs.list_runs_assemblies module mgnipy.emgapi_v2_client.api.samples module mgnipy.emgapi_v2_client.api.samples.get_mgnify_sample module mgnipy.emgapi_v2_client.api.samples.list_mgnify_samples module mgnipy.emgapi_v2_client.api.samples.list_sample_runs module mgnipy.emgapi_v2_client.api.studies module mgnipy.emgapi_v2_client.api.studies.get_mgnify_study module mgnipy.emgapi_v2_client.api.studies.get_super_study module mgnipy.emgapi_v2_client.api.studies.list_mgnify_studies module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_analyses module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_publications module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_samples module mgnipy.emgapi_v2_client.api.studies.list_super_studies module mgnipy.emgapi_v2_client.client module mgnipy.emgapi_v2_client.errors module mgnipy.emgapi_v2_client.models module mgnipy.emgapi_v2_client.models.additional_contained_genome_schema module mgnipy.emgapi_v2_client.models.analysed_run module mgnipy.emgapi_v2_client.models.analysed_run_detail module mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type module mgnipy.emgapi_v2_client.models.assembly module mgnipy.emgapi_v2_client.models.assembly_detail module mgnipy.emgapi_v2_client.models.assembly_detail_metadata_type_0 module mgnipy.emgapi_v2_client.models.assembly_detail_status_type_0 module mgnipy.emgapi_v2_client.models.biome module mgnipy.emgapi_v2_client.models.biome_list_filters module mgnipy.emgapi_v2_client.models.download_file_index_file module mgnipy.emgapi_v2_client.models.download_file_index_file_index_type module mgnipy.emgapi_v2_client.models.download_file_type module mgnipy.emgapi_v2_client.models.download_type module mgnipy.emgapi_v2_client.models.ena_sample_fields module mgnipy.emgapi_v2_client.models.ena_study_fields module mgnipy.emgapi_v2_client.models.europe_pmc_annotation module mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group module mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention module mgnipy.emgapi_v2_client.models.europe_pmc_annotation_tag module mgnipy.emgapi_v2_client.models.experiment_types module mgnipy.emgapi_v2_client.models.genome_assembly_link_schema module mgnipy.emgapi_v2_client.models.genome_catalogue_base module mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type module mgnipy.emgapi_v2_client.models.genome_catalogue_base_other_stats_type_0 module mgnipy.emgapi_v2_client.models.genome_catalogue_detail module mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type module mgnipy.emgapi_v2_client.models.genome_catalogue_detail_other_stats_type_0 module mgnipy.emgapi_v2_client.models.genome_catalogue_list module mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type module mgnipy.emgapi_v2_client.models.genome_catalogue_list_other_stats_type_0 module mgnipy.emgapi_v2_client.models.genome_detail module mgnipy.emgapi_v2_client.models.genome_list module mgnipy.emgapi_v2_client.models.genome_schema module mgnipy.emgapi_v2_client.models.genome_type module mgnipy.emgapi_v2_client.models.genome_with_annotations module mgnipy.emgapi_v2_client.models.genome_with_annotations_annotations module mgnipy.emgapi_v2_client.models.input_ module

mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0 module mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0 module mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0 module mgnipy.emgapi_v2_client.models.m_gnify_analysis module mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail module mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_metadata_type_0 module mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_quality_control_summary_type_0 module mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file module mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation module mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations module mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations module mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations_additional_property_type_1 module mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_metadata_type_0 module mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_quality_control_summary_type_0 module mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file module mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type module mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type module mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file module mgnipy.emgapi_v2_client.models.m_gnify_publication module mgnipy.emgapi_v2_client.models.m_gnify_publication_detail module mgnipy.emgapi_v2_client.models.m_gnify_publication_detail_metadata module mgnipy.emgapi_v2_client.models.m_gnify_publication_metadata module mgnipy.emgapi_v2_client.models.m_gnify_sample module mgnipy.emgapi_v2_client.models.m_gnify_sample_detail module mgnipy.emgapi_v2_client.models.m_gnify_sample_detail_metadata module mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata module mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata_metadata module mgnipy.emgapi_v2_client.models.m_gnify_study module mgnipy.emgapi_v2_client.models.m_gnify_study_detail module mgnipy.emgapi_v2_client.models.m_gnify_study_detail_metadata module mgnipy.emgapi_v2_client.models.m_gnify_study_download_file module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study module mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study module mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at module mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0 module mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year module mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0 module mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at module mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0 module mgnipy.emgapi_v2_client.models.pipeline_versions module mgnipy.emgapi_v2_client.models.publication_annotations module mgnipy.emgapi_v2_client.models.publication_list_filters module mgnipy.emgapi_v2_client.models.run_list_filters module mgnipy.emgapi_v2_client.models.sample_list_filters module mgnipy.emgapi_v2_client.models.schema module mgnipy.emgapi_v2_client.models.study_list_filters module mgnipy.emgapi_v2_client.models.super_study module mgnipy.emgapi_v2_client.models.super_study_detail module mgnipy.emgapi_v2_client.models.token_verify_input_schema module mgnipy.emgapi_v2_client.models.webin_token_refresh_request module mgnipy.emgapi_v2_client.models.webin_token_request module mgnipy.emgapi_v2_client.models.webin_token_response module mgnipy.emgapi_v2_client.types module mgnipy.mgnipy module mgnipy.V2 module mgnipy.V2.core module mgnipy.V2.datasets module mgnipy.V2.endpoints module mgnipy.V2.mixins module mgnipy.V2.proxies module mgnipy.V2.query_executor module mgnipy.V2.query_set module mime_type (mgnipy.emgapi_v2_client.types.File attribute) module mgnipy mgnipy.cli mgnipy.emgapi_v2_client mgnipy.emgapi_v2_client.api mgnipy.emgapi_v2_client.api.analyses mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations_of_type mgnipy.emgapi_v2_client.api.analyses.get_mgnify_analysis mgnipy.emgapi_v2_client.api.analyses.list_mgnify_analyses mgnipy.emgapi_v2_client.api.assemblies mgnipy.emgapi_v2_client.api.assemblies.get_assembly mgnipy.emgapi_v2_client.api.assemblies.list_additional_contained_genomes_for_assembly mgnipy.emgapi_v2_client.api.assemblies.list_analyses_for_assembly mgnipy.emgapi_v2_client.api.assemblies.list_assemblies mgnipy.emgapi_v2_client.api.assemblies.list_genome_links_for_assembly mgnipy.emgapi_v2_client.api.authentication mgnipy.emgapi_v2_client.api.authentication.token_obtain_sliding mgnipy.emgapi_v2_client.api.authentication.token_refresh_sliding mgnipy.emgapi_v2_client.api.authentication.token_verify mgnipy.emgapi_v2_client.api.genomes mgnipy.emgapi_v2_client.api.genomes.get_genome_annotations mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue_genomes mgnipy.emgapi_v2_client.api.genomes.get_mgnify_genome mgnipy.emgapi_v2_client.api.genomes.list_genome_catalogues mgnipy.emgapi_v2_client.api.genomes.list_mgnify_genomes mgnipy.emgapi_v2_client.api.miscellaneous mgnipy.emgapi_v2_client.api.miscellaneous.list_mgnify_biomes mgnipy.emgapi_v2_client.api.private_data mgnipy.emgapi_v2_client.api.private_data.list_private_mgnify_studies mgnipy.emgapi_v2_client.api.publications mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication_annotations mgnipy.emgapi_v2_client.api.publications.list_mgnify_publications mgnipy.emgapi_v2_client.api.runs mgnipy.emgapi_v2_client.api.runs.get_analysed_run mgnipy.emgapi_v2_client.api.runs.list_analysed_runs mgnipy.emgapi_v2_client.api.runs.list_runs_analyses mgnipy.emgapi_v2_client.api.runs.list_runs_assemblies mgnipy.emgapi_v2_client.api.samples mgnipy.emgapi_v2_client.api.samples.get_mgnify_sample mgnipy.emgapi_v2_client.api.samples.list_mgnify_samples mgnipy.emgapi_v2_client.api.samples.list_sample_runs mgnipy.emgapi_v2_client.api.studies mgnipy.emgapi_v2_client.api.studies.get_mgnify_study mgnipy.emgapi_v2_client.api.studies.get_super_study mgnipy.emgapi_v2_client.api.studies.list_mgnify_studies mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_analyses mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_publications mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_samples mgnipy.emgapi_v2_client.api.studies.list_super_studies mgnipy.emgapi_v2_client.client mgnipy.emgapi_v2_client.errors mgnipy.emgapi_v2_client.models mgnipy.emgapi_v2_client.models.additional_contained_genome_schema mgnipy.emgapi_v2_client.models.analysed_run mgnipy.emgapi_v2_client.models.analysed_run_detail mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type mgnipy.emgapi_v2_client.models.assembly mgnipy.emgapi_v2_client.models.assembly_detail mgnipy.emgapi_v2_client.models.assembly_detail_metadata_type_0 mgnipy.emgapi_v2_client.models.assembly_detail_status_type_0 mgnipy.emgapi_v2_client.models.biome mgnipy.emgapi_v2_client.models.biome_list_filters mgnipy.emgapi_v2_client.models.download_file_index_file mgnipy.emgapi_v2_client.models.download_file_index_file_index_type mgnipy.emgapi_v2_client.models.download_file_type mgnipy.emgapi_v2_client.models.download_type mgnipy.emgapi_v2_client.models.ena_sample_fields mgnipy.emgapi_v2_client.models.ena_study_fields mgnipy.emgapi_v2_client.models.europe_pmc_annotation mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention mgnipy.emgapi_v2_client.models.europe_pmc_annotation_tag mgnipy.emgapi_v2_client.models.experiment_types mgnipy.emgapi_v2_client.models.genome_assembly_link_schema mgnipy.emgapi_v2_client.models.genome_catalogue_base mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type mgnipy.emgapi_v2_client.models.genome_catalogue_base_other_stats_type_0 mgnipy.emgapi_v2_client.models.genome_catalogue_detail mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type mgnipy.emgapi_v2_client.models.genome_catalogue_detail_other_stats_type_0 mgnipy.emgapi_v2_client.models.genome_catalogue_list mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type mgnipy.emgapi_v2_client.models.genome_catalogue_list_other_stats_type_0 mgnipy.emgapi_v2_client.models.genome_detail mgnipy.emgapi_v2_client.models.genome_list mgnipy.emgapi_v2_client.models.genome_schema mgnipy.emgapi_v2_client.models.genome_type mgnipy.emgapi_v2_client.models.genome_with_annotations mgnipy.emgapi_v2_client.models.genome_with_annotations_annotations mgnipy.emgapi_v2_client.models.input_ mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0 mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0 mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0 mgnipy.emgapi_v2_client.models.m_gnify_analysis mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_metadata_type_0 mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_quality_control_summary_type_0 mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations_additional_property_type_1 mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_metadata_type_0 mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_quality_control_summary_type_0 mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file mgnipy.emgapi_v2_client.models.m_gnify_publication mgnipy.emgapi_v2_client.models.m_gnify_publication_detail mgnipy.emgapi_v2_client.models.m_gnify_publication_detail_metadata mgnipy.emgapi_v2_client.models.m_gnify_publication_metadata mgnipy.emgapi_v2_client.models.m_gnify_sample mgnipy.emgapi_v2_client.models.m_gnify_sample_detail mgnipy.emgapi_v2_client.models.m_gnify_sample_detail_metadata mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata_metadata mgnipy.emgapi_v2_client.models.m_gnify_study mgnipy.emgapi_v2_client.models.m_gnify_study_detail mgnipy.emgapi_v2_client.models.m_gnify_study_detail_metadata mgnipy.emgapi_v2_client.models.m_gnify_study_download_file mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0 mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0 mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0 mgnipy.emgapi_v2_client.models.pipeline_versions mgnipy.emgapi_v2_client.models.publication_annotations mgnipy.emgapi_v2_client.models.publication_list_filters mgnipy.emgapi_v2_client.models.run_list_filters mgnipy.emgapi_v2_client.models.sample_list_filters mgnipy.emgapi_v2_client.models.schema mgnipy.emgapi_v2_client.models.study_list_filters mgnipy.emgapi_v2_client.models.super_study mgnipy.emgapi_v2_client.models.super_study_detail mgnipy.emgapi_v2_client.models.token_verify_input_schema mgnipy.emgapi_v2_client.models.webin_token_refresh_request mgnipy.emgapi_v2_client.models.webin_token_request mgnipy.emgapi_v2_client.models.webin_token_response mgnipy.emgapi_v2_client.types mgnipy.mgnipy mgnipy.V2 mgnipy.V2.core mgnipy.V2.datasets mgnipy.V2.endpoints mgnipy.V2.mixins mgnipy.V2.proxies mgnipy.V2.query_executor mgnipy.V2.query_set

N

n_50 (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] name (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_tag.EuropePmcAnnotationTag attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationTag attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] ncbi_genome_accession (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] NCBI_REPORTING_STANDARD (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema) NinjaPaginationResponseSchemaAnalysedRun (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run) NinjaPaginationResponseSchemaAssembly (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly) NinjaPaginationResponseSchemaAssemblyDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail) NinjaPaginationResponseSchemaBiome (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome)

NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema) NinjaPaginationResponseSchemaGenomeCatalogueList (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list) NinjaPaginationResponseSchemaGenomeList (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list) NinjaPaginationResponseSchemaMGnifyAnalysis (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis) NinjaPaginationResponseSchemaMGnifyAnalysisDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail) NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation) NinjaPaginationResponseSchemaMGnifyPublication (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication) NinjaPaginationResponseSchemaMGnifySample (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample) NinjaPaginationResponseSchemaMGnifySampleWithMetadata (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata) NinjaPaginationResponseSchemaMGnifyStudy (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study) NinjaPaginationResponseSchemaSuperStudy (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study) NON_CODING_RNAS (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute) num_contigs (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1]

O

order (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt attribute), [1] (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year.OrderByFilterLiteralpublishedYearPublishedYear attribute), [1] (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt attribute), [1] (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt attribute), [1] (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYear attribute), [1] (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt attribute), [1] OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at) OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0) OrderByFilterLiteralpublishedYearPublishedYear (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year) OrderByFilterLiteralpublishedYearPublishedYearOrderType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0) OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at)

OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0) organism (mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation.MGnifyAnalysisTypedAnnotation attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisTypedAnnotation attribute), [1] OTHER (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute) other (mgnipy.emgapi_v2_client.models.publication_annotations.PublicationAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.PublicationAnnotations attribute), [1] other_stats (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1]

P

page (mgnipy.emgapi_v2_client.models.Input attribute), [1] (mgnipy.emgapi_v2_client.models.input_.Input attribute), [1] page() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_executor.QueryExecutor method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) page_size (mgnipy.emgapi_v2_client.models.Input attribute), [1] (mgnipy.emgapi_v2_client.models.input_.Input attribute), [1] page_size() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) pagination_status (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) params (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) parent_identifier (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] parent_is_private (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] parent_results_dir (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] PARENT_STUDY_ACCESSION (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) parsed (mgnipy.emgapi_v2_client.types.Response attribute) partition() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method)

password (mgnipy.emgapi_v2_client.models.webin_token_request.WebinTokenRequest attribute), [1] (mgnipy.emgapi_v2_client.models.WebinTokenRequest attribute), [1] path (mgnipy.emgapi_v2_client.models.download_file_index_file.DownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.DownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file.MGnifyDownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] patric_genome_accession (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1] payload (mgnipy.emgapi_v2_client.types.File attribute) PFAMS (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType attribute) PH (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) pipeline_version (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute) pipeline_version_tag (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] PipelineVersions (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.pipeline_versions) postfix (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention attribute), [1] prefix (mgnipy.emgapi_v2_client.AuthenticatedClient attribute), [1] (mgnipy.emgapi_v2_client.client.AuthenticatedClient attribute), [1] (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention attribute), [1] (mgnipy.V2.AuthenticatedClient attribute), [1] preview() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) PrivateStudies (class in mgnipy.V2.proxies) PROJECT_NAME (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) PROKARYOTES (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType attribute) protein_catalogue_description (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] protein_catalogue_name (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] PROTOCOL_LABEL (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) provider (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention attribute), [1] PublicationAnnotations (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.publication_annotations) PublicationDetail (class in mgnipy.V2.proxies) PublicationListFilters (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.publication_list_filters) Publications (class in mgnipy.V2.proxies) published_after (mgnipy.emgapi_v2_client.models.publication_list_filters.PublicationListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.PublicationListFilters attribute), [1] published_before (mgnipy.emgapi_v2_client.models.publication_list_filters.PublicationListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.PublicationListFilters attribute), [1] PUBLISHED_YEAR (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 attribute) published_year (mgnipy.emgapi_v2_client.models.m_gnify_publication.MGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail attribute), [1] PUBLISHED_YEAR (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 attribute) pubmed_id (mgnipy.emgapi_v2_client.models.m_gnify_publication.MGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail attribute), [1]

Q

QUALITY_CONTROL (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute) quality_control_summary (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute)

QueryExecutor (class in mgnipy.V2.query_executor) QuerySet (class in mgnipy.V2.query_set)

R

raise_on_unexpected_status (mgnipy.emgapi_v2_client.AuthenticatedClient attribute), [1] (mgnipy.emgapi_v2_client.Client attribute), [1] (mgnipy.emgapi_v2_client.client.AuthenticatedClient attribute), [1] (mgnipy.emgapi_v2_client.client.Client attribute), [1] (mgnipy.V2.AuthenticatedClient attribute), [1] (mgnipy.V2.Client attribute), [1] read_run (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute) reads_study_accession (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute), [1] RELATED_SAMPLE_ACCESSION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) related_studies (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudyDetail attribute), [1] removeprefix() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) removesuffix() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) replace() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) request_url (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) request_urls (mgnipy.V2.Analyses attribute) (mgnipy.V2.core.MGnifier attribute) (mgnipy.V2.Genomes attribute) (mgnipy.V2.proxies.Analyses attribute) (mgnipy.V2.proxies.AnalysisDetail attribute) (mgnipy.V2.proxies.Assemblies attribute) (mgnipy.V2.proxies.AssemblyDetail attribute) (mgnipy.V2.proxies.BiomeDetail attribute) (mgnipy.V2.proxies.Biomes attribute) (mgnipy.V2.proxies.CatalogueDetail attribute) (mgnipy.V2.proxies.Catalogues attribute) (mgnipy.V2.proxies.GenomeDetail attribute) (mgnipy.V2.proxies.Genomes attribute) (mgnipy.V2.proxies.MGnifyDetail attribute) (mgnipy.V2.proxies.MGnifyList attribute) (mgnipy.V2.proxies.PrivateStudies attribute) (mgnipy.V2.proxies.PublicationDetail attribute) (mgnipy.V2.proxies.Publications attribute) (mgnipy.V2.proxies.RunDetail attribute) (mgnipy.V2.proxies.Runs attribute) (mgnipy.V2.proxies.SampleDetail attribute) (mgnipy.V2.proxies.Samples attribute) (mgnipy.V2.proxies.Studies attribute) (mgnipy.V2.proxies.StudyDetail attribute) (mgnipy.V2.query_set.QuerySet attribute) (mgnipy.V2.Samples attribute) (mgnipy.V2.Studies attribute) require_pagination() (mgnipy.V2.query_executor.QueryExecutor method) resolve_query_string() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.DescribeEmgapiMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) RESOURCE (mgnipy.V2.Analyses attribute) resource (mgnipy.V2.Analyses property) RESOURCE (mgnipy.V2.Biomes attribute) resource (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) RESOURCE (mgnipy.V2.Genomes attribute) resource (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) RESOURCE (mgnipy.V2.proxies.Analyses attribute) resource (mgnipy.V2.proxies.Analyses property) RESOURCE (mgnipy.V2.proxies.AnalysisDetail attribute) resource (mgnipy.V2.proxies.AnalysisDetail property) RESOURCE (mgnipy.V2.proxies.Assemblies attribute) resource (mgnipy.V2.proxies.Assemblies property) RESOURCE (mgnipy.V2.proxies.AssemblyDetail attribute) resource (mgnipy.V2.proxies.AssemblyDetail property) RESOURCE (mgnipy.V2.proxies.BiomeDetail attribute) resource (mgnipy.V2.proxies.BiomeDetail property) RESOURCE (mgnipy.V2.proxies.Biomes attribute) resource (mgnipy.V2.proxies.Biomes property) RESOURCE (mgnipy.V2.proxies.CatalogueDetail attribute) resource (mgnipy.V2.proxies.CatalogueDetail property) RESOURCE (mgnipy.V2.proxies.Catalogues attribute) resource (mgnipy.V2.proxies.Catalogues property) RESOURCE (mgnipy.V2.proxies.GenomeDetail attribute) resource (mgnipy.V2.proxies.GenomeDetail property) RESOURCE (mgnipy.V2.proxies.Genomes attribute) resource (mgnipy.V2.proxies.Genomes property) RESOURCE (mgnipy.V2.proxies.MGnifyDetail attribute) resource (mgnipy.V2.proxies.MGnifyDetail property) RESOURCE (mgnipy.V2.proxies.MGnifyList attribute) resource (mgnipy.V2.proxies.MGnifyList property) RESOURCE (mgnipy.V2.proxies.PrivateStudies attribute) resource (mgnipy.V2.proxies.PrivateStudies property) RESOURCE (mgnipy.V2.proxies.PublicationDetail attribute) resource (mgnipy.V2.proxies.PublicationDetail property) RESOURCE (mgnipy.V2.proxies.Publications attribute) resource (mgnipy.V2.proxies.Publications property) RESOURCE (mgnipy.V2.proxies.RunDetail attribute) resource (mgnipy.V2.proxies.RunDetail property) RESOURCE (mgnipy.V2.proxies.Runs attribute) resource (mgnipy.V2.proxies.Runs property) RESOURCE (mgnipy.V2.proxies.SampleDetail attribute) resource (mgnipy.V2.proxies.SampleDetail property) RESOURCE (mgnipy.V2.proxies.Samples attribute) resource (mgnipy.V2.proxies.Samples property) RESOURCE (mgnipy.V2.proxies.Studies attribute) resource (mgnipy.V2.proxies.Studies property) RESOURCE (mgnipy.V2.proxies.StudyDetail attribute) resource (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) RESOURCE (mgnipy.V2.Samples attribute) resource (mgnipy.V2.Samples property) RESOURCE (mgnipy.V2.Studies attribute) resource (mgnipy.V2.Studies property) Response (class in mgnipy.emgapi_v2_client.types) result_directory (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] results (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property)

results_dir (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute) results_ids (mgnipy.V2.Analyses property) (mgnipy.V2.Biomes property) (mgnipy.V2.core.MGnifier property) (mgnipy.V2.Genomes property) (mgnipy.V2.MGnifier property) (mgnipy.V2.proxies.Analyses property) (mgnipy.V2.proxies.AnalysisDetail property) (mgnipy.V2.proxies.Assemblies property) (mgnipy.V2.proxies.AssemblyDetail property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) (mgnipy.V2.proxies.CatalogueDetail property) (mgnipy.V2.proxies.Catalogues property) (mgnipy.V2.proxies.GenomeDetail property) (mgnipy.V2.proxies.Genomes property) (mgnipy.V2.proxies.MGnifyDetail property) (mgnipy.V2.proxies.MGnifyList property) (mgnipy.V2.proxies.PrivateStudies property) (mgnipy.V2.proxies.PublicationDetail property) (mgnipy.V2.proxies.Publications property) (mgnipy.V2.proxies.RunDetail property) (mgnipy.V2.proxies.Runs property) (mgnipy.V2.proxies.SampleDetail property) (mgnipy.V2.proxies.Samples property) (mgnipy.V2.proxies.Studies property) (mgnipy.V2.proxies.StudyDetail property) (mgnipy.V2.query_set.QuerySet property) (mgnipy.V2.Samples property) (mgnipy.V2.Studies property) ResultsHandlerMixin (class in mgnipy.V2.mixins) rfind() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) rindex() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) rjust() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) rpartition() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType 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(mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) run (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysis attribute), [1] 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S

SALINITY (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) sample (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute) sample_accession (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail 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attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) short_description (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] show_tree() (mgnipy.V2.Biomes method) (mgnipy.V2.mixins.BiomesTreeMixin method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) slug (mgnipy.emgapi_v2_client.models.super_study.SuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudyDetail attribute), [1] species_rep (mgnipy.emgapi_v2_client.models.genome_assembly_link_schema.GenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeAssemblyLinkSchema attribute), [1] SPECIMEN_VOUCHER (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) split() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) 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(mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) splitlines() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) 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(mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) startswith() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) 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(mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) STATISTICS (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute) status (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute), [1] STATUS (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) status_code (mgnipy.emgapi_v2_client.types.Response attribute) STRAIN (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute)

stream() (mgnipy.V2.datasets.MGazine method) stream_biom() (mgnipy.V2.datasets.MGazine method) stream_fasta() (mgnipy.V2.datasets.MGazine method) stream_gff() (mgnipy.V2.datasets.MGazine method) stream_gzipped() (mgnipy.V2.datasets.MGazine method) stream_html() (mgnipy.V2.datasets.MGazine method) stream_json() (mgnipy.V2.datasets.MGazine method) stream_jsonl() (mgnipy.V2.datasets.MGazine method) stream_tree() (mgnipy.V2.datasets.MGazine method) stream_tsv() (mgnipy.V2.datasets.MGazine method) stream_txt() (mgnipy.V2.datasets.MGazine method) strip() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) Studies (class in mgnipy.V2) (class in mgnipy.V2.proxies) studies (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleDetail attribute), [1] study (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRunDetail attribute), [1] study_accession (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRun attribute), [1] (mgnipy.emgapi_v2_client.models.AnalysedRunDetail attribute), [1] STUDY_ACCESSION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) study_accession (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysis attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations attribute), [1] (mgnipy.V2.datasets.MGazine attribute) STUDY_ALIAS (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) STUDY_DESCRIPTION (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) STUDY_NAME (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) STUDY_TITLE (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) StudyDetail (class in mgnipy.V2.proxies) StudyListFilters (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.study_list_filters) SUB_SPECIES (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) SUB_STRAIN (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) sub_url() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.DescribeEmgapiMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) SUBMISSION_ACCESSION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) SUBMISSION_TOOL (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) SUBMITTED_HOST_SEX (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) SuperStudy (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.super_study) SuperStudyDetail (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.super_study_detail) SVG (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) swapcase() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) sync() (in module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations) (in module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations_of_type) (in module mgnipy.emgapi_v2_client.api.analyses.get_mgnify_analysis) (in module mgnipy.emgapi_v2_client.api.analyses.list_mgnify_analyses) (in module mgnipy.emgapi_v2_client.api.assemblies.get_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_additional_contained_genomes_for_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_analyses_for_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_assemblies) (in module mgnipy.emgapi_v2_client.api.assemblies.list_genome_links_for_assembly) (in module mgnipy.emgapi_v2_client.api.authentication.token_obtain_sliding) (in module mgnipy.emgapi_v2_client.api.authentication.token_refresh_sliding) (in module mgnipy.emgapi_v2_client.api.authentication.token_verify) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_annotations) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue_genomes) (in module mgnipy.emgapi_v2_client.api.genomes.get_mgnify_genome) (in module mgnipy.emgapi_v2_client.api.genomes.list_genome_catalogues) (in module mgnipy.emgapi_v2_client.api.genomes.list_mgnify_genomes) (in module mgnipy.emgapi_v2_client.api.miscellaneous.list_mgnify_biomes) (in module mgnipy.emgapi_v2_client.api.private_data.list_private_mgnify_studies) (in module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication) (in module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication_annotations) (in module mgnipy.emgapi_v2_client.api.publications.list_mgnify_publications) (in module mgnipy.emgapi_v2_client.api.runs.get_analysed_run) (in module mgnipy.emgapi_v2_client.api.runs.list_analysed_runs) (in module mgnipy.emgapi_v2_client.api.runs.list_runs_analyses) (in module mgnipy.emgapi_v2_client.api.runs.list_runs_assemblies) (in module mgnipy.emgapi_v2_client.api.samples.get_mgnify_sample) (in module mgnipy.emgapi_v2_client.api.samples.list_mgnify_samples) (in module mgnipy.emgapi_v2_client.api.samples.list_sample_runs) (in module mgnipy.emgapi_v2_client.api.studies.get_mgnify_study) (in module mgnipy.emgapi_v2_client.api.studies.get_super_study) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_studies) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_analyses) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_publications) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_samples) (in module mgnipy.emgapi_v2_client.api.studies.list_super_studies) sync_detailed() (in module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations) (in module mgnipy.emgapi_v2_client.api.analyses.analysis_get_mgnify_analysis_with_annotations_of_type) (in module mgnipy.emgapi_v2_client.api.analyses.get_mgnify_analysis) (in module mgnipy.emgapi_v2_client.api.analyses.list_mgnify_analyses) (in module mgnipy.emgapi_v2_client.api.assemblies.get_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_additional_contained_genomes_for_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_analyses_for_assembly) (in module mgnipy.emgapi_v2_client.api.assemblies.list_assemblies) (in module mgnipy.emgapi_v2_client.api.assemblies.list_genome_links_for_assembly) (in module mgnipy.emgapi_v2_client.api.authentication.token_obtain_sliding) (in module mgnipy.emgapi_v2_client.api.authentication.token_refresh_sliding) (in module mgnipy.emgapi_v2_client.api.authentication.token_verify) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_annotations) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue) (in module mgnipy.emgapi_v2_client.api.genomes.get_genome_catalogue_genomes) (in module mgnipy.emgapi_v2_client.api.genomes.get_mgnify_genome) (in module mgnipy.emgapi_v2_client.api.genomes.list_genome_catalogues) (in module mgnipy.emgapi_v2_client.api.genomes.list_mgnify_genomes) (in module mgnipy.emgapi_v2_client.api.miscellaneous.list_mgnify_biomes) (in module mgnipy.emgapi_v2_client.api.private_data.list_private_mgnify_studies) (in module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication) (in module mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication_annotations) (in module mgnipy.emgapi_v2_client.api.publications.list_mgnify_publications) (in module mgnipy.emgapi_v2_client.api.runs.get_analysed_run) (in module mgnipy.emgapi_v2_client.api.runs.list_analysed_runs) (in module mgnipy.emgapi_v2_client.api.runs.list_runs_analyses) (in module mgnipy.emgapi_v2_client.api.runs.list_runs_assemblies) (in module mgnipy.emgapi_v2_client.api.samples.get_mgnify_sample) (in module mgnipy.emgapi_v2_client.api.samples.list_mgnify_samples) (in module mgnipy.emgapi_v2_client.api.samples.list_sample_runs) (in module mgnipy.emgapi_v2_client.api.studies.get_mgnify_study) (in module mgnipy.emgapi_v2_client.api.studies.get_super_study) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_studies) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_analyses) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_publications) (in module mgnipy.emgapi_v2_client.api.studies.list_mgnify_study_samples) (in module mgnipy.emgapi_v2_client.api.studies.list_super_studies)

T

TAG (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) tags (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention attribute), [1] TARGET_GENE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) TAX_DIVISION (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) TAX_ID (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) TAX_LINEAGE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENAStudyFields attribute) taxon_lineage (mgnipy.emgapi_v2_client.models.genome_schema.GenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeSchema attribute), [1] TAXONOMIC_ANALYSIS (mgnipy.emgapi_v2_client.models.download_type.DownloadType attribute) (mgnipy.emgapi_v2_client.models.DownloadType attribute) TAXONOMIC_CLASSIFICATION (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) TAXONOMIC_IDENTITY_MARKER (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) TAXONOMIES_DADA2_PR2 (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType attribute) TAXONOMIES_DADA2_SILVA (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType attribute) TAXONOMIES_ITS_ONE_DB (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType attribute) TAXONOMIES_LSU (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType attribute) TAXONOMIES_PR2 (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType attribute) TAXONOMIES_SSU (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType attribute) TAXONOMIES_UNITE (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType attribute) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType attribute) TEMPERATURE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) TISSUE_LIB (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) TISSUE_TYPE (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) title (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group.EuropePmcAnnotationGroup attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationGroup attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_publication.MGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublication attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.publication_list_filters.PublicationListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.PublicationListFilters attribute), [1] (mgnipy.emgapi_v2_client.models.super_study.SuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.super_study_detail.SuperStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudy attribute), [1] (mgnipy.emgapi_v2_client.models.SuperStudyDetail attribute), [1] title() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) to_df() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.ResultsHandlerMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) to_dict() (mgnipy.emgapi_v2_client.models.additional_contained_genome_schema.AdditionalContainedGenomeSchema method) (mgnipy.emgapi_v2_client.models.AdditionalContainedGenomeSchema method) (mgnipy.emgapi_v2_client.models.analysed_run.AnalysedRun method) (mgnipy.emgapi_v2_client.models.analysed_run_detail.AnalysedRunDetail method) (mgnipy.emgapi_v2_client.models.AnalysedRun method) (mgnipy.emgapi_v2_client.models.AnalysedRunDetail method) (mgnipy.emgapi_v2_client.models.Assembly method) (mgnipy.emgapi_v2_client.models.assembly.Assembly method) (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail method) (mgnipy.emgapi_v2_client.models.assembly_detail_metadata_type_0.AssemblyDetailMetadataType0 method) (mgnipy.emgapi_v2_client.models.assembly_detail_status_type_0.AssemblyDetailStatusType0 method) (mgnipy.emgapi_v2_client.models.AssemblyDetail method) (mgnipy.emgapi_v2_client.models.AssemblyDetailMetadataType0 method) (mgnipy.emgapi_v2_client.models.AssemblyDetailStatusType0 method) (mgnipy.emgapi_v2_client.models.Biome method) (mgnipy.emgapi_v2_client.models.biome.Biome method) (mgnipy.emgapi_v2_client.models.biome_list_filters.BiomeListFilters method) (mgnipy.emgapi_v2_client.models.BiomeListFilters method) (mgnipy.emgapi_v2_client.models.download_file_index_file.DownloadFileIndexFile method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFile method) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation.EuropePmcAnnotation method) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_group.EuropePmcAnnotationGroup method) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention method) (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_tag.EuropePmcAnnotationTag method) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotation method) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationGroup method) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention method) (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationTag method) (mgnipy.emgapi_v2_client.models.genome_assembly_link_schema.GenomeAssemblyLinkSchema method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_other_stats_type_0.GenomeCatalogueBaseOtherStatsType0 method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_other_stats_type_0.GenomeCatalogueDetailOtherStatsType0 method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_other_stats_type_0.GenomeCatalogueListOtherStatsType0 method) (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail method) (mgnipy.emgapi_v2_client.models.genome_list.GenomeList method) (mgnipy.emgapi_v2_client.models.genome_schema.GenomeSchema method) (mgnipy.emgapi_v2_client.models.genome_with_annotations.GenomeWithAnnotations method) (mgnipy.emgapi_v2_client.models.genome_with_annotations_annotations.GenomeWithAnnotationsAnnotations method) (mgnipy.emgapi_v2_client.models.GenomeAssemblyLinkSchema method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseOtherStatsType0 method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailOtherStatsType0 method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueList method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListOtherStatsType0 method) (mgnipy.emgapi_v2_client.models.GenomeDetail method) (mgnipy.emgapi_v2_client.models.GenomeList method) (mgnipy.emgapi_v2_client.models.GenomeSchema method) (mgnipy.emgapi_v2_client.models.GenomeWithAnnotations method) (mgnipy.emgapi_v2_client.models.GenomeWithAnnotationsAnnotations method) (mgnipy.emgapi_v2_client.models.Input method) (mgnipy.emgapi_v2_client.models.input_.Input method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis.MGnifyAnalysis method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail.MGnifyAnalysisDetail method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_metadata_type_0.MGnifyAnalysisDetailMetadataType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_detail_quality_control_summary_type_0.MGnifyAnalysisDetailQualityControlSummaryType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_typed_annotation.MGnifyAnalysisTypedAnnotation method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations.MGnifyAnalysisWithAnnotations method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations.MGnifyAnalysisWithAnnotationsAnnotations method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_annotations_additional_property_type_1.MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_metadata_type_0.MGnifyAnalysisWithAnnotationsMetadataType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_analysis_with_annotations_quality_control_summary_type_0.MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file.MGnifyDownloadFileIndexFile method) (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile method) (mgnipy.emgapi_v2_client.models.m_gnify_publication.MGnifyPublication method) (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail.MGnifyPublicationDetail method) (mgnipy.emgapi_v2_client.models.m_gnify_publication_detail_metadata.MGnifyPublicationDetailMetadata method) (mgnipy.emgapi_v2_client.models.m_gnify_publication_metadata.MGnifyPublicationMetadata method) (mgnipy.emgapi_v2_client.models.m_gnify_sample.MGnifySample method) (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail method) (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail_metadata.MGnifySampleDetailMetadata method) (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata method) (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata_metadata.MGnifySampleWithMetadataMetadata method) (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy method) (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail method) (mgnipy.emgapi_v2_client.models.m_gnify_study_detail_metadata.MGnifyStudyDetailMetadata method) (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysis method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetail method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetailMetadataType0 method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDetailQualityControlSummaryType0 method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisTypedAnnotation method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotations method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsAnnotations method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsAnnotationsAdditionalPropertyType1 method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsMetadataType0 method) (mgnipy.emgapi_v2_client.models.MGnifyAnalysisWithAnnotationsQualityControlSummaryType0 method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFile method) (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile method) (mgnipy.emgapi_v2_client.models.MGnifyPublication method) (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetail method) (mgnipy.emgapi_v2_client.models.MGnifyPublicationDetailMetadata method) (mgnipy.emgapi_v2_client.models.MGnifyPublicationMetadata method) (mgnipy.emgapi_v2_client.models.MGnifySample method) (mgnipy.emgapi_v2_client.models.MGnifySampleDetail method) (mgnipy.emgapi_v2_client.models.MGnifySampleDetailMetadata method) (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata method) (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadataMetadata method) (mgnipy.emgapi_v2_client.models.MGnifyStudy method) (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail method) (mgnipy.emgapi_v2_client.models.MGnifyStudyDetailMetadata method) (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_additional_contained_genome_schema.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_analysed_run.NinjaPaginationResponseSchemaAnalysedRun method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly.NinjaPaginationResponseSchemaAssembly method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_assembly_detail.NinjaPaginationResponseSchemaAssemblyDetail method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_biome.NinjaPaginationResponseSchemaBiome method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_assembly_link_schema.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_catalogue_list.NinjaPaginationResponseSchemaGenomeCatalogueList method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_genome_list.NinjaPaginationResponseSchemaGenomeList method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis.NinjaPaginationResponseSchemaMGnifyAnalysis method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_detail.NinjaPaginationResponseSchemaMGnifyAnalysisDetail method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_analysis_typed_annotation.NinjaPaginationResponseSchemaMGnifyAnalysisTypedAnnotation method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_publication.NinjaPaginationResponseSchemaMGnifyPublication method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample.NinjaPaginationResponseSchemaMGnifySample method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_sample_with_metadata.NinjaPaginationResponseSchemaMGnifySampleWithMetadata method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_m_gnify_study.NinjaPaginationResponseSchemaMGnifyStudy method) (mgnipy.emgapi_v2_client.models.ninja_pagination_response_schema_super_study.NinjaPaginationResponseSchemaSuperStudy method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAdditionalContainedGenomeSchema method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAnalysedRun method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssembly method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaAssemblyDetail method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaBiome method) (mgnipy.emgapi_v2_client.models.NinjaPaginationResponseSchemaGenomeAssemblyLinkSchema method) 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(mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year.OrderByFilterLiteralpublishedYearPublishedYear method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAt method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYear method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAt method) (mgnipy.emgapi_v2_client.models.publication_annotations.PublicationAnnotations method) (mgnipy.emgapi_v2_client.models.publication_list_filters.PublicationListFilters method) (mgnipy.emgapi_v2_client.models.PublicationAnnotations method) 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(mgnipy.emgapi_v2_client.models.webin_token_refresh_request.WebinTokenRefreshRequest method) (mgnipy.emgapi_v2_client.models.webin_token_request.WebinTokenRequest method) (mgnipy.emgapi_v2_client.models.webin_token_response.WebinTokenResponse method) (mgnipy.emgapi_v2_client.models.WebinTokenRefreshRequest method) (mgnipy.emgapi_v2_client.models.WebinTokenRequest method) (mgnipy.emgapi_v2_client.models.WebinTokenResponse method) (mgnipy.V2.datasets.MGazine method)

to_json() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.ResultsHandlerMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) to_list() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.ResultsHandlerMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) to_polars() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.ResultsHandlerMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) to_tuple() (mgnipy.emgapi_v2_client.types.File method) token (mgnipy.emgapi_v2_client.AuthenticatedClient attribute), [1] (mgnipy.emgapi_v2_client.client.AuthenticatedClient attribute), [1] (mgnipy.emgapi_v2_client.models.token_verify_input_schema.TokenVerifyInputSchema attribute), [1] (mgnipy.emgapi_v2_client.models.TokenVerifyInputSchema attribute), [1] (mgnipy.emgapi_v2_client.models.webin_token_refresh_request.WebinTokenRefreshRequest attribute), [1] (mgnipy.emgapi_v2_client.models.webin_token_response.WebinTokenResponse attribute), [1] (mgnipy.emgapi_v2_client.models.WebinTokenRefreshRequest attribute), [1] (mgnipy.emgapi_v2_client.models.WebinTokenResponse attribute), [1] (mgnipy.V2.AuthenticatedClient attribute), [1] token_type (mgnipy.emgapi_v2_client.models.webin_token_response.WebinTokenResponse attribute), [1] (mgnipy.emgapi_v2_client.models.WebinTokenResponse attribute), [1] TokenVerifyInputSchema (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.token_verify_input_schema) total_pages (mgnipy.V2.Analyses attribute) (mgnipy.V2.core.MGnifier attribute) (mgnipy.V2.Genomes attribute) (mgnipy.V2.proxies.Analyses attribute) (mgnipy.V2.proxies.AnalysisDetail attribute) (mgnipy.V2.proxies.Assemblies attribute) (mgnipy.V2.proxies.AssemblyDetail attribute) (mgnipy.V2.proxies.BiomeDetail attribute) (mgnipy.V2.proxies.Biomes attribute) (mgnipy.V2.proxies.CatalogueDetail attribute) (mgnipy.V2.proxies.Catalogues attribute) (mgnipy.V2.proxies.GenomeDetail attribute) (mgnipy.V2.proxies.Genomes attribute) (mgnipy.V2.proxies.MGnifyDetail attribute) (mgnipy.V2.proxies.MGnifyList attribute) (mgnipy.V2.proxies.PrivateStudies attribute) (mgnipy.V2.proxies.PublicationDetail attribute) (mgnipy.V2.proxies.Publications attribute) (mgnipy.V2.proxies.RunDetail attribute) (mgnipy.V2.proxies.Runs attribute) (mgnipy.V2.proxies.SampleDetail attribute) (mgnipy.V2.proxies.Samples attribute) (mgnipy.V2.proxies.Studies attribute) (mgnipy.V2.proxies.StudyDetail attribute) (mgnipy.V2.query_set.QuerySet attribute) (mgnipy.V2.Samples attribute) (mgnipy.V2.Studies attribute) translate() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method) TREE (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) tree (mgnipy.V2.Biomes property) (mgnipy.V2.mixins.BiomesTreeMixin property) (mgnipy.V2.proxies.BiomeDetail property) (mgnipy.V2.proxies.Biomes property) TSV (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType attribute) (mgnipy.emgapi_v2_client.models.DownloadFileType attribute) type_ (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_mention.EuropePmcAnnotationMention attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationMention attribute), [1] (mgnipy.emgapi_v2_client.models.genome_detail.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_list.GenomeList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeList attribute), [1]

U

unclustered_genome_count (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] UnexpectedStatus UNKNO (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes attribute) (mgnipy.emgapi_v2_client.models.ExperimentTypes attribute) Unset (class in mgnipy.emgapi_v2_client.types) updated_at (mgnipy.emgapi_v2_client.models.additional_contained_genome_schema.AdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.AdditionalContainedGenomeSchema attribute), [1] (mgnipy.emgapi_v2_client.models.Assembly attribute), [1] (mgnipy.emgapi_v2_client.models.assembly.Assembly attribute), [1] (mgnipy.emgapi_v2_client.models.assembly_detail.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.AssemblyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_assembly_link_schema.GenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeAssemblyLinkSchema attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] UPDATED_AT (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 attribute) updated_at (mgnipy.emgapi_v2_client.models.m_gnify_sample.MGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_detail.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_sample_with_metadata.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_detail.MGnifyStudyDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySample attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleDetail attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifySampleWithMetadata attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudy attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDetail 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(mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method)

uri (mgnipy.emgapi_v2_client.models.europe_pmc_annotation_tag.EuropePmcAnnotationTag attribute), [1] (mgnipy.emgapi_v2_client.models.EuropePmcAnnotationTag attribute), [1] url (mgnipy.emgapi_v2_client.models.m_gnify_analysis_download_file.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file.MGnifyDownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_genome_download_file.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.m_gnify_study_download_file.MGnifyStudyDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyAnalysisDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyGenomeDownloadFile attribute), [1] (mgnipy.emgapi_v2_client.models.MGnifyStudyDownloadFile attribute), [1] url_dict (mgnipy.V2.datasets.MGazine property) url_list (mgnipy.V2.datasets.MGazine property) url_path() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.DescribeEmgapiMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method) username (mgnipy.emgapi_v2_client.models.webin_token_request.WebinTokenRequest attribute), [1] (mgnipy.emgapi_v2_client.models.WebinTokenRequest attribute), [1]

V

V1 (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions attribute) (mgnipy.emgapi_v2_client.models.PipelineVersions attribute) V2 (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions attribute) (mgnipy.emgapi_v2_client.models.PipelineVersions attribute) V3 (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions attribute) (mgnipy.emgapi_v2_client.models.PipelineVersions attribute) V4 (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions attribute) (mgnipy.emgapi_v2_client.models.PipelineVersions attribute) V4_1 (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions attribute) (mgnipy.emgapi_v2_client.models.PipelineVersions attribute) V5 (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions attribute) (mgnipy.emgapi_v2_client.models.PipelineVersions attribute) V6 (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions attribute) (mgnipy.emgapi_v2_client.models.PipelineVersions attribute) V6_1 (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions attribute) (mgnipy.emgapi_v2_client.models.PipelineVersions attribute) validate_endpoint_kwargs() (mgnipy.V2.Analyses method) (mgnipy.V2.Biomes method) (mgnipy.V2.core.MGnifier method) (mgnipy.V2.Genomes method) (mgnipy.V2.MGnifier method) (mgnipy.V2.mixins.DescribeEmgapiMixin method) (mgnipy.V2.proxies.Analyses method) (mgnipy.V2.proxies.AnalysisDetail method) (mgnipy.V2.proxies.Assemblies method) (mgnipy.V2.proxies.AssemblyDetail method) (mgnipy.V2.proxies.BiomeDetail method) (mgnipy.V2.proxies.Biomes method) (mgnipy.V2.proxies.CatalogueDetail method) (mgnipy.V2.proxies.Catalogues method) (mgnipy.V2.proxies.GenomeDetail method) (mgnipy.V2.proxies.Genomes method) (mgnipy.V2.proxies.MGnifyDetail method) (mgnipy.V2.proxies.MGnifyList method) (mgnipy.V2.proxies.PrivateStudies method) (mgnipy.V2.proxies.PublicationDetail method) (mgnipy.V2.proxies.Publications method) (mgnipy.V2.proxies.RunDetail method) (mgnipy.V2.proxies.Runs method) (mgnipy.V2.proxies.SampleDetail method) (mgnipy.V2.proxies.Samples method) (mgnipy.V2.proxies.Studies method) (mgnipy.V2.proxies.StudyDetail method) (mgnipy.V2.query_set.QuerySet method) (mgnipy.V2.Samples method) (mgnipy.V2.Studies method)

VALUE_1 (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 attribute) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 attribute) VALUE_2 (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 attribute) VALUE_3 (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 attribute) VALUE_4 (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 attribute) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 attribute) VARIETY (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields attribute) (mgnipy.emgapi_v2_client.models.ENASampleFields attribute) version (mgnipy.emgapi_v2_client.models.genome_catalogue_base.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_detail.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.genome_catalogue_list.GenomeCatalogueList attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueBase attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetail attribute), [1] (mgnipy.emgapi_v2_client.models.GenomeCatalogueList attribute), [1] VIRUSES (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType attribute) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType attribute) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType attribute)

W

WebinTokenRefreshRequest (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.webin_token_refresh_request) WebinTokenRequest (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.webin_token_request) WebinTokenResponse (class in mgnipy.emgapi_v2_client.models) (class in mgnipy.emgapi_v2_client.models.webin_token_response) with_cookies() (mgnipy.emgapi_v2_client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.Client method) (mgnipy.emgapi_v2_client.client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.client.Client method) (mgnipy.V2.AuthenticatedClient method) (mgnipy.V2.Client method)

with_headers() (mgnipy.emgapi_v2_client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.Client method) (mgnipy.emgapi_v2_client.client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.client.Client method) (mgnipy.V2.AuthenticatedClient method) (mgnipy.V2.Client method) with_timeout() (mgnipy.emgapi_v2_client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.Client method) (mgnipy.emgapi_v2_client.client.AuthenticatedClient method) (mgnipy.emgapi_v2_client.client.Client method) (mgnipy.V2.AuthenticatedClient method) (mgnipy.V2.Client method) with_traceback() (mgnipy.emgapi_v2_client.errors.UnexpectedStatus method)

Z

zfill() (mgnipy.emgapi_v2_client.models.analysis_get_mgnify_analysis_with_annotations_of_type_m_gnify_functional_analysis_annotation_type.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.AnalysisGetMgnifyAnalysisWithAnnotationsOfTypeMGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.download_file_index_file_index_type.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.download_file_type.DownloadFileType method) (mgnipy.emgapi_v2_client.models.download_type.DownloadType method) (mgnipy.emgapi_v2_client.models.DownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.DownloadFileType method) (mgnipy.emgapi_v2_client.models.DownloadType method) (mgnipy.emgapi_v2_client.models.ena_sample_fields.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ena_study_fields.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.ENASampleFields method) (mgnipy.emgapi_v2_client.models.ENAStudyFields method) (mgnipy.emgapi_v2_client.models.experiment_types.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.ExperimentTypes method) (mgnipy.emgapi_v2_client.models.genome_catalogue_base_catalogue_type.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_detail_catalogue_type.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_catalogue_list_catalogue_type.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.genome_type.GenomeType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueBaseCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueDetailCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeCatalogueListCatalogueType method) (mgnipy.emgapi_v2_client.models.GenomeType method) (mgnipy.emgapi_v2_client.models.list_mgnify_publications_order_type_0.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_samples_order_type_0.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.list_mgnify_studies_order_type_0.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyPublicationsOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifySamplesOrderType0 method) (mgnipy.emgapi_v2_client.models.ListMgnifyStudiesOrderType0 method) (mgnipy.emgapi_v2_client.models.m_gnify_download_file_index_file_index_type.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.m_gnify_functional_analysis_annotation_type.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.MGnifyDownloadFileIndexFileIndexType method) (mgnipy.emgapi_v2_client.models.MGnifyFunctionalAnalysisAnnotationType method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalaccession_accession_updated_at_updated_at_order_type_0.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalpublished_year_published_year_order_type_0.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.order_by_filter_literalsample_title_sample_title_updated_at_updated_at_order_type_0.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralaccessionAccessionUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralpublishedYearPublishedYearOrderType0 method) (mgnipy.emgapi_v2_client.models.OrderByFilterLiteralsampleTitleSampleTitleUpdatedAtUpdatedAtOrderType0 method) (mgnipy.emgapi_v2_client.models.pipeline_versions.PipelineVersions method) (mgnipy.emgapi_v2_client.models.PipelineVersions method)