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MGni.py

Getting started

What is MGni.py?
Installing MGni.py
Connecting to the MGnify API
Getting MGnify data
Collecting more metadata

Fundamentals and usage

The mgnipy.MGnipy() client
MGnify API Endpoint ≈ a mgnipy.MGnifier
MGnify List vs. Detail endpoints
Configuring MGnipyConfig
Understanding the cache
Accessing your private data
MGazine of MGnify data

Demos

Get a MGnify List
Getting MGnify datasets
Part 1: Integrating Parkinson’s disease cohorts
Part 2: Integrating Parkinson’s disease cohorts
Getting all Wastewater study datasets

Reference

mgnipy.mgnipy module
mgnipy.V2.mgnifier package
mgnipy.V2.datasets package
mgnipy.V2.collect.mgnetizer module
mgnipy.V2.collect.biosampler module
mgnipy.V2.proxies package
mgnipy.V2.mixins module
mgnipy.emgapi_v2_client.client module
mgnipy.emgapi_v2_client.api package

Contributor's Guide

Contributing code
Understanding MGnifiers
The emgapi_v2_client
What is openapi-python-client
Docs creation

Repository
Suggest edit

.rst

mgnipy.cli module

Contents

main()

mgnipy.cli module#

main(argv=None)[source]#

Contents

main()

By MGnify

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