from http import HTTPStatus
from typing import Any
from urllib.parse import quote
import httpx
from ...client import AuthenticatedClient, Client
from ...types import Response, UNSET
from ... import errors
from ...models.ninja_pagination_response_schema_assembly_detail import (
NinjaPaginationResponseSchemaAssemblyDetail,
)
from ...types import Unset
def _get_kwargs(
accession: str,
*,
page: int | Unset = 1,
page_size: int | None | Unset = UNSET,
) -> dict[str, Any]:
params: dict[str, Any] = {}
params["page"] = page
json_page_size: int | None | Unset
if isinstance(page_size, Unset):
json_page_size = UNSET
else:
json_page_size = page_size
params["page_size"] = json_page_size
params = {k: v for k, v in params.items() if v is not UNSET and v is not None}
_kwargs: dict[str, Any] = {
"method": "get",
"url": "/metagenomics/api/v2/samples/{accession}/assemblies/".format(
accession=quote(str(accession), safe=""),
),
"params": params,
}
return _kwargs
def _parse_response(
*, client: AuthenticatedClient | Client, response: httpx.Response
) -> NinjaPaginationResponseSchemaAssemblyDetail | None:
if response.status_code == 200:
response_200 = NinjaPaginationResponseSchemaAssemblyDetail.from_dict(
response.json()
)
return response_200
if client.raise_on_unexpected_status:
raise errors.UnexpectedStatus(response.status_code, response.content)
else:
return None
def _build_response(
*, client: AuthenticatedClient | Client, response: httpx.Response
) -> Response[NinjaPaginationResponseSchemaAssemblyDetail]:
return Response(
status_code=HTTPStatus(response.status_code),
content=response.content,
headers=response.headers,
parsed=_parse_response(client=client, response=response),
)
[docs]
def sync_detailed(
accession: str,
*,
client: AuthenticatedClient,
page: int | Unset = 1,
page_size: int | None | Unset = UNSET,
) -> Response[NinjaPaginationResponseSchemaAssemblyDetail]:
"""List assemblies associated with this sample
Samples may be associated with one or more assemblies. Assemblies are collections of contigs
generated from sequencing reads.
Args:
accession (str):
page (int | Unset): Default: 1.
page_size (int | None | Unset):
Raises:
errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
httpx.TimeoutException: If the request takes longer than Client.timeout.
Returns:
Response[NinjaPaginationResponseSchemaAssemblyDetail]
"""
kwargs = _get_kwargs(
accession=accession,
page=page,
page_size=page_size,
)
response = client.get_httpx_client().request(
**kwargs,
)
return _build_response(client=client, response=response)
[docs]
def sync(
accession: str,
*,
client: AuthenticatedClient,
page: int | Unset = 1,
page_size: int | None | Unset = UNSET,
) -> NinjaPaginationResponseSchemaAssemblyDetail | None:
"""List assemblies associated with this sample
Samples may be associated with one or more assemblies. Assemblies are collections of contigs
generated from sequencing reads.
Args:
accession (str):
page (int | Unset): Default: 1.
page_size (int | None | Unset):
Raises:
errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
httpx.TimeoutException: If the request takes longer than Client.timeout.
Returns:
NinjaPaginationResponseSchemaAssemblyDetail
"""
return sync_detailed(
accession=accession,
client=client,
page=page,
page_size=page_size,
).parsed
[docs]
async def asyncio_detailed(
accession: str,
*,
client: AuthenticatedClient,
page: int | Unset = 1,
page_size: int | None | Unset = UNSET,
) -> Response[NinjaPaginationResponseSchemaAssemblyDetail]:
"""List assemblies associated with this sample
Samples may be associated with one or more assemblies. Assemblies are collections of contigs
generated from sequencing reads.
Args:
accession (str):
page (int | Unset): Default: 1.
page_size (int | None | Unset):
Raises:
errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
httpx.TimeoutException: If the request takes longer than Client.timeout.
Returns:
Response[NinjaPaginationResponseSchemaAssemblyDetail]
"""
kwargs = _get_kwargs(
accession=accession,
page=page,
page_size=page_size,
)
response = await client.get_async_httpx_client().request(**kwargs)
return _build_response(client=client, response=response)
[docs]
async def asyncio(
accession: str,
*,
client: AuthenticatedClient,
page: int | Unset = 1,
page_size: int | None | Unset = UNSET,
) -> NinjaPaginationResponseSchemaAssemblyDetail | None:
"""List assemblies associated with this sample
Samples may be associated with one or more assemblies. Assemblies are collections of contigs
generated from sequencing reads.
Args:
accession (str):
page (int | Unset): Default: 1.
page_size (int | None | Unset):
Raises:
errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
httpx.TimeoutException: If the request takes longer than Client.timeout.
Returns:
NinjaPaginationResponseSchemaAssemblyDetail
"""
return (
await asyncio_detailed(
accession=accession,
client=client,
page=page,
page_size=page_size,
)
).parsed
