Source code for mgnipy.emgapi_v2_client.api.publications.get_mgnify_publication_annotations

from http import HTTPStatus
from typing import Any
from urllib.parse import quote

import httpx

from ... import errors
from ...client import (
    AuthenticatedClient,
    Client,
)
from ...models.publication_annotations import PublicationAnnotations
from ...types import Response


def _get_kwargs(
    pubmed_id: int,
) -> dict[str, Any]:

    _kwargs: dict[str, Any] = {
        "method": "get",
        "url": "/metagenomics/api/v2/publications/{pubmed_id}/annotations".format(
            pubmed_id=quote(str(pubmed_id), safe=""),
        ),
    }

    return _kwargs


def _parse_response(
    *, client: AuthenticatedClient | Client, response: httpx.Response
) -> PublicationAnnotations | None:
    if response.status_code == 200:
        response_200 = PublicationAnnotations.from_dict(response.json())

        return response_200

    if client.raise_on_unexpected_status:
        raise errors.UnexpectedStatus(response.status_code, response.content)
    else:
        return None


def _build_response(
    *, client: AuthenticatedClient | Client, response: httpx.Response
) -> Response[PublicationAnnotations]:
    return Response(
        status_code=HTTPStatus(response.status_code),
        content=response.content,
        headers=response.headers,
        parsed=_parse_response(client=client, response=response),
    )


[docs] def sync_detailed( pubmed_id: int, *, client: AuthenticatedClient | Client, ) -> Response[PublicationAnnotations]: """Get any full-text annotations associated with the publication Full-text annotations are retrieved from Europe PMC, text mined for relevant metagenomic metadata terms Args: pubmed_id (int): Raises: errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True. httpx.TimeoutException: If the request takes longer than Client.timeout. Returns: Response[PublicationAnnotations] """ kwargs = _get_kwargs( pubmed_id=pubmed_id, ) response = client.get_httpx_client().request( **kwargs, ) return _build_response(client=client, response=response)
[docs] def sync( pubmed_id: int, *, client: AuthenticatedClient | Client, ) -> PublicationAnnotations | None: """Get any full-text annotations associated with the publication Full-text annotations are retrieved from Europe PMC, text mined for relevant metagenomic metadata terms Args: pubmed_id (int): Raises: errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True. httpx.TimeoutException: If the request takes longer than Client.timeout. Returns: PublicationAnnotations """ return sync_detailed( pubmed_id=pubmed_id, client=client, ).parsed
[docs] async def asyncio_detailed( pubmed_id: int, *, client: AuthenticatedClient | Client, ) -> Response[PublicationAnnotations]: """Get any full-text annotations associated with the publication Full-text annotations are retrieved from Europe PMC, text mined for relevant metagenomic metadata terms Args: pubmed_id (int): Raises: errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True. httpx.TimeoutException: If the request takes longer than Client.timeout. Returns: Response[PublicationAnnotations] """ kwargs = _get_kwargs( pubmed_id=pubmed_id, ) response = await client.get_async_httpx_client().request(**kwargs) return _build_response(client=client, response=response)
[docs] async def asyncio( pubmed_id: int, *, client: AuthenticatedClient | Client, ) -> PublicationAnnotations | None: """Get any full-text annotations associated with the publication Full-text annotations are retrieved from Europe PMC, text mined for relevant metagenomic metadata terms Args: pubmed_id (int): Raises: errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True. httpx.TimeoutException: If the request takes longer than Client.timeout. Returns: PublicationAnnotations """ return ( await asyncio_detailed( pubmed_id=pubmed_id, client=client, ) ).parsed