Source code for mgnipy.emgapi_v2_client.models.additional_contained_genome_schema
from __future__ import annotations
import datetime
from collections.abc import Mapping
from typing import (
TYPE_CHECKING,
Any,
TypeVar,
cast,
)
from attrs import define as _attrs_define
from attrs import field as _attrs_field
from dateutil.parser import isoparse
from ..types import (
UNSET,
Unset,
)
if TYPE_CHECKING:
from ..models.genome_schema import GenomeSchema
T = TypeVar("T", bound="AdditionalContainedGenomeSchema")
[docs]
@_attrs_define
class AdditionalContainedGenomeSchema:
"""
Attributes:
genome (GenomeSchema): Simple schema for a Genome model.
updated_at (datetime.datetime | None):
run_accession (None | str | Unset): ENA accession of the run that produced this assembly
containment (float | None | Unset): Containment score for the genome within the assembly
cani (float | None | Unset): Containment Average Nucleotide Identity (cANI)
"""
genome: GenomeSchema
updated_at: datetime.datetime | None
run_accession: None | str | Unset = UNSET
containment: float | None | Unset = UNSET
cani: float | None | Unset = UNSET
additional_properties: dict[str, Any] = _attrs_field(init=False, factory=dict)
[docs]
def to_dict(self) -> dict[str, Any]:
genome = self.genome.to_dict()
updated_at: None | str
if isinstance(self.updated_at, datetime.datetime):
updated_at = self.updated_at.isoformat()
else:
updated_at = self.updated_at
run_accession: None | str | Unset
if isinstance(self.run_accession, Unset):
run_accession = UNSET
else:
run_accession = self.run_accession
containment: float | None | Unset
if isinstance(self.containment, Unset):
containment = UNSET
else:
containment = self.containment
cani: float | None | Unset
if isinstance(self.cani, Unset):
cani = UNSET
else:
cani = self.cani
field_dict: dict[str, Any] = {}
field_dict.update(self.additional_properties)
field_dict.update(
{
"genome": genome,
"updated_at": updated_at,
}
)
if run_accession is not UNSET:
field_dict["run_accession"] = run_accession
if containment is not UNSET:
field_dict["containment"] = containment
if cani is not UNSET:
field_dict["cani"] = cani
return field_dict
[docs]
@classmethod
def from_dict(cls: type[T], src_dict: Mapping[str, Any]) -> T:
from ..models.genome_schema import GenomeSchema
d = dict(src_dict)
genome = GenomeSchema.from_dict(d.pop("genome"))
def _parse_updated_at(data: object) -> datetime.datetime | None:
if data is None:
return data
try:
if not isinstance(data, str):
raise TypeError()
updated_at_type_0 = isoparse(data)
return updated_at_type_0
except (TypeError, ValueError, AttributeError, KeyError):
pass
return cast(datetime.datetime | None, data)
updated_at = _parse_updated_at(d.pop("updated_at"))
def _parse_run_accession(data: object) -> None | str | Unset:
if data is None:
return data
if isinstance(data, Unset):
return data
return cast(None | str | Unset, data)
run_accession = _parse_run_accession(d.pop("run_accession", UNSET))
def _parse_containment(data: object) -> float | None | Unset:
if data is None:
return data
if isinstance(data, Unset):
return data
return cast(float | None | Unset, data)
containment = _parse_containment(d.pop("containment", UNSET))
def _parse_cani(data: object) -> float | None | Unset:
if data is None:
return data
if isinstance(data, Unset):
return data
return cast(float | None | Unset, data)
cani = _parse_cani(d.pop("cani", UNSET))
additional_contained_genome_schema = cls(
genome=genome,
updated_at=updated_at,
run_accession=run_accession,
containment=containment,
cani=cani,
)
additional_contained_genome_schema.additional_properties = d
return additional_contained_genome_schema
@property
def additional_keys(self) -> list[str]:
return list(self.additional_properties.keys())
def __getitem__(self, key: str) -> Any:
return self.additional_properties[key]
def __setitem__(self, key: str, value: Any) -> None:
self.additional_properties[key] = value
def __delitem__(self, key: str) -> None:
del self.additional_properties[key]
def __contains__(self, key: str) -> bool:
return key in self.additional_properties