# MGni.py

```{include} ../README.md
:start-line: 0
:relative-docs: docs
:relative-images:
```

```{toctree}
:maxdepth: 2
:caption: "Getting Started"
:hidden:
tutorials/getting-started/available-resources
tutorials/getting-started/mgnify-biomes
tutorials/getting-started/study-analyses-simple
tutorials/getting-started/access-private-data
```

```{toctree}
:maxdepth: 2
:caption: "Demos"
:hidden:
<!-- tutorials/demo/pd-gut-microbiome -->
<!-- tutorials/demo/MOFAR -->
<!-- tutorials/demo/SpeSpeNet -->
```

```{toctree}
:maxdepth: 2
:caption: "Development Guide"
:hidden:
dev/README_emgapi-v2-client.md
dev/intro-openapi-python-client.ipynb
dev/capabilities_demo.ipynb
```

```{toctree}
:maxdepth: 2
:caption: "Reference"
:hidden:

reference/modules

```

```{toctree}
:maxdepth: 2
:caption: "Technical notes"
:hidden:

README.md
```

```{include} ../Contributing.md
:start-line: 0
```

```{include} ../CREDITS.md
:start-line: 0
```